Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46801 to 48602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49119 to 56418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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48,306 + 15712 mRNA_7344 0.84 2.0
48,340 - 15712 mRNA_7344 0.85 -0.7
48,514 - -0.3
48,656 - 0.1
48,657 - -0.6
48,658 - 0.1
48,659 + 0.2
48,665 - -1.3
48,670 + 3.7
48,673 + 0.2
48,682 + 1.5
48,686 - 0.7
48,691 + -0.1
48,695 + -1.1
48,785 - -0.7
48,809 - 0.4
48,810 - 1.0
48,812 - 1.6
48,834 - 0.6
48,857 - 0.6
48,869 - 0.7
48,871 - -0.2
48,877 - 1.7
48,891 + 1.7
48,892 - -0.2
48,948 - -1.0
49,009 - 1.1
49,086 + 0.3
49,113 - 1.0
49,193 + 0.8
49,449 - 1.1
49,679 + 0.3
49,704 + -0.2
49,812 + 1.2
50,053 - 15713 mRNA_7345 0.13 1.3
50,127 - 15713 mRNA_7345 0.14 0.6
50,301 - 15713 mRNA_7345 0.16 -0.2
50,312 + 15713 mRNA_7345 0.16 -0.4
50,390 - 15713 mRNA_7345 0.17 2.3
50,843 + 15713 mRNA_7345 0.24 -0.0
50,894 - 15713 mRNA_7345 0.24 -0.3
50,915 + 15713 mRNA_7345 0.25 0.3
50,941 - 15713 mRNA_7345 0.25 -0.0
51,223 + 15713 mRNA_7345 0.29 -1.1
51,441 - 15713 mRNA_7345 0.32 1.1
51,801 - 15713 mRNA_7345 0.37 -0.9
51,849 + 15713 mRNA_7345 0.37 2.0
51,884 + 15713 mRNA_7345 0.38 1.5
51,912 + 15713 mRNA_7345 0.38 1.7
52,138 - 15713 mRNA_7345 0.41 1.9
52,148 + 15713 mRNA_7345 0.41 0.3
52,148 + 15713 mRNA_7345 0.41 0.1
52,187 - 15713 mRNA_7345 0.42 0.1
52,265 + 15713 mRNA_7345 0.43 0.7
52,705 + 15713 mRNA_7345 0.49 0.8
52,726 - 15713 mRNA_7345 0.49 1.5
52,726 - 15713 mRNA_7345 0.49 -0.6
52,726 - 15713 mRNA_7345 0.49 1.4
52,777 + 15713 mRNA_7345 0.50 0.8
52,804 + 15713 mRNA_7345 0.50 0.7
52,904 - 15713 mRNA_7345 0.52 0.2
53,045 - 15713 mRNA_7345 0.54 -1.4
53,083 - 15713 mRNA_7345 0.54 0.1
53,148 - 15713 mRNA_7345 0.55 0.1
54,129 - 15713 mRNA_7345 0.69 -0.5
54,246 - 15713 mRNA_7345 0.70 0.6
54,429 - 15713 mRNA_7345 0.73 -0.1
54,448 + 15713 mRNA_7345 0.73 0.7
54,574 + 15713 mRNA_7345 0.75 1.8
54,789 + 15713 mRNA_7345 0.78 0.4
54,825 + 15713 mRNA_7345 0.78 1.4
55,326 + 15713 mRNA_7345 0.85 -0.1
55,636 + 15713 mRNA_7345 0.89 0.4
55,636 + 15713 mRNA_7345 0.89 0.1
55,839 - -0.1
55,864 - -0.2
56,023 - 0.4
56,392 - 0.9
56,461 - -1.3
56,600 - 1.1
56,632 + -0.1
56,640 + 0.6
56,648 + 2.9
56,651 + 1.8
56,793 - 2.6
56,794 + 0.4
56,803 + 0.3
56,811 + -1.6
56,817 + 0.8
56,818 - 0.3
56,832 + -0.2
56,845 + -0.4
56,913 - 0.8
56,918 - 1.2
56,938 - 0.6
56,951 + 0.5
56,964 - 1.2
56,976 + -0.0
56,977 + -1.1
56,981 + 0.3
56,985 + -0.3
56,986 + 2.0
56,990 - 0.5
56,991 - -0.5
56,997 + 0.1
57,052 - 0.5
57,055 + -0.1
57,065 + 1.3
57,074 + 0.4
57,079 - 0.7
57,091 - 0.6
57,092 + 0.9
57,096 - 1.7
57,098 - -0.4
57,101 + 0.6
57,101 + 0.5
57,101 + -0.3
57,110 - -0.6
57,120 - 0.7
57,195 + -1.0
57,206 - -0.5
57,219 + 0.5
57,243 + -0.0
57,254 + 0.5
57,260 - -0.1
57,266 + 1.4
57,267 - 0.6
57,268 + 1.4
57,272 - -0.1
57,291 + 0.1
57,347 + -0.7