Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6993

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573 15360 mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622654 to 624401 15361 mRNA_6994: 15362 - K10134 EI24 etoposide-induced 2.4 mRNA, at 624528 to 626391 15362

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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621,675 - 15360 mRNA_6992 0.58 0.6
621,701 - 15360 mRNA_6992 0.59 -2.2
621,708 - 15360 mRNA_6992 0.60 0.5
621,781 + 15360 mRNA_6992 0.63 -0.1
622,145 - 15360 mRNA_6992 0.80 1.9
622,148 - 15360 mRNA_6992 0.80 0.7
622,267 + 15360 mRNA_6992 0.86 0.3
622,536 + -0.3
622,558 - 0.3
622,695 - 1.3
622,980 - 15361 mRNA_6993 0.19 0.8
623,576 - 15361 mRNA_6993 0.53 -0.6
624,020 + 15361 mRNA_6993 0.78 -2.1
624,269 + 0.8
624,303 + 0.9
624,435 - 1.2
624,437 + -0.7
624,454 - 0.6
624,469 + -1.2
624,595 + 1.7
624,723 + 15362 mRNA_6994 0.10 1.4
624,727 + 15362 mRNA_6994 0.11 0.1
624,737 + 15362 mRNA_6994 0.11 0.8
624,743 + 15362 mRNA_6994 0.12 -0.1
624,749 + 15362 mRNA_6994 0.12 2.3
624,880 + 15362 mRNA_6994 0.19 0.6
624,902 - 15362 mRNA_6994 0.20 -0.5
625,205 + 15362 mRNA_6994 0.36 1.6