Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6856

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282233 to 283773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284062 to 291229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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283,072 + 15223 mRNA_6855 0.54 0.0
283,225 - 15223 mRNA_6855 0.64 -0.6
283,306 + 15223 mRNA_6855 0.70 1.9
283,374 + 15223 mRNA_6855 0.74 -0.7
283,528 - 15223 mRNA_6855 0.84 0.6
283,671 - -0.6
283,675 + 0.5
283,681 - -0.3
283,682 - 1.2
283,684 - -0.9
283,687 - 1.1
283,703 + -0.8
283,710 - 0.2
283,718 + 0.2
283,834 + -0.3
283,985 + 0.5
283,989 - 2.0
283,991 - 0.1
283,991 + -0.4
284,019 - 0.5
284,134 - -0.2
284,136 - 1.1
284,286 - 1.0
284,468 - -2.1
284,652 + 1.1
284,858 - 15224 mRNA_6856 0.11 3.1
284,911 + 15224 mRNA_6856 0.12 0.9
285,014 + 15224 mRNA_6856 0.13 -0.6
285,319 - 15224 mRNA_6856 0.18 0.4
285,337 - 15224 mRNA_6856 0.18 2.4
285,396 + 15224 mRNA_6856 0.19 -0.5
285,603 - 15224 mRNA_6856 0.21 -0.9
285,605 + 15224 mRNA_6856 0.22 -0.6
285,861 - 15224 mRNA_6856 0.25 0.4
286,103 + 15224 mRNA_6856 0.28 1.3
286,218 + 15224 mRNA_6856 0.30 0.8
286,221 + 15224 mRNA_6856 0.30 3.0
286,246 + 15224 mRNA_6856 0.30 0.0
286,372 - 15224 mRNA_6856 0.32 0.3
286,373 + 15224 mRNA_6856 0.32 2.2
286,565 + 15224 mRNA_6856 0.35 0.2
286,578 - 15224 mRNA_6856 0.35 0.7
286,637 - 15224 mRNA_6856 0.36 -1.2
286,715 + 15224 mRNA_6856 0.37 0.6
286,721 + 15224 mRNA_6856 0.37 0.4
286,773 + 15224 mRNA_6856 0.38 1.9
286,795 - 15224 mRNA_6856 0.38 -0.0
286,972 + 15224 mRNA_6856 0.41 -0.4
287,068 + 15224 mRNA_6856 0.42 0.8
287,125 - 15224 mRNA_6856 0.43 0.9
287,133 + 15224 mRNA_6856 0.43 -0.2
287,144 - 15224 mRNA_6856 0.43 -0.3
287,584 - 15224 mRNA_6856 0.49 0.1
287,615 + 15224 mRNA_6856 0.50 -0.2
287,619 + 15224 mRNA_6856 0.50 0.0
287,860 + 15224 mRNA_6856 0.53 1.2
287,924 - 15224 mRNA_6856 0.54 -0.3
288,249 - 15224 mRNA_6856 0.58 0.9
288,326 - 15224 mRNA_6856 0.59 0.8
288,401 + 15224 mRNA_6856 0.61 -0.2
288,416 - 15224 mRNA_6856 0.61 2.5
288,688 + 15224 mRNA_6856 0.65 1.5
288,693 + 15224 mRNA_6856 0.65 0.8
288,797 + 15224 mRNA_6856 0.66 0.4
289,385 - 15224 mRNA_6856 0.74 0.0
289,601 + 15224 mRNA_6856 0.77 1.7
289,864 + 15224 mRNA_6856 0.81 0.5
290,024 - 15224 mRNA_6856 0.83 1.2
290,215 - 15224 mRNA_6856 0.86 0.3
290,323 - 15224 mRNA_6856 0.87 2.5
290,330 + 15224 mRNA_6856 0.87 0.4
290,424 - 15224 mRNA_6856 0.89 -0.3
290,470 + 15224 mRNA_6856 0.89 0.1
290,667 - 0.7
290,778 + -0.2
290,887 + 0.8
290,909 + 2.1
290,930 + 0.1
290,941 + 0.9
291,056 + 1.3
291,056 - 0.1
291,219 - 2.1
291,225 - 1.2
291,321 - -0.1
291,324 - 0.3
291,325 - 0.8
291,662 + -0.4
291,838 + 1.0
291,975 + 0.8
292,093 + -0.5
292,120 + 0.5