Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6645

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6645: 15013 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 1335554 to 1337313 15013 mRNA_6646: 15014 - K14647 vpr minor extracellular serine protease Vpr, at 1337672 to 1341391 15014

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,334,556 - 1.6
1,334,573 - -1.1
1,334,574 + 1.2
1,334,574 + -2.1
1,334,579 - -0.4
1,334,585 - 0.1
1,334,588 + 0.6
1,334,590 - 1.4
1,334,592 + 0.3
1,334,593 - 0.7
1,334,612 + -0.2
1,334,614 - 0.1
1,334,615 - 0.3
1,334,623 + -0.4
1,334,623 - 1.3
1,334,654 - 0.4
1,334,655 - 1.5
1,334,672 - 0.2
1,334,676 - 0.6
1,334,681 - -0.1
1,334,687 - -0.0
1,334,690 - 1.8
1,334,691 + -0.7
1,334,700 + -0.1
1,334,701 - 0.1
1,334,702 + -0.0
1,334,712 - 1.5
1,334,712 - 0.3
1,334,714 - 0.6
1,334,726 - 1.0
1,334,731 - 0.3
1,334,757 - -0.1
1,334,760 - 0.9
1,334,764 + -3.3
1,334,773 + 1.8
1,334,784 + 0.6
1,334,792 + 0.9
1,334,820 + -0.9
1,334,822 - 0.4
1,334,827 + 1.9
1,334,838 + -0.4
1,334,856 - -0.3
1,334,875 + 1.2
1,334,882 - 0.6
1,334,885 - 0.7
1,334,898 - -0.1
1,334,915 - 0.5
1,334,915 + 0.0
1,334,920 + 1.3
1,334,924 + 0.1
1,334,932 - 1.5
1,334,959 - 0.3
1,334,961 + -0.9
1,334,974 - 0.1
1,334,975 - 0.5
1,334,976 + 0.6
1,334,976 - 0.8
1,334,981 - -0.5
1,334,989 - 0.5
1,334,993 - 1.7
1,334,996 + 1.4
1,334,996 + 2.1
1,335,007 + 0.4
1,335,008 - 0.5
1,335,012 + 0.4
1,335,014 + 0.5
1,335,015 + 0.0
1,335,018 + 0.3
1,335,019 - -0.3
1,335,026 + 0.1
1,335,030 + 0.9
1,335,030 - 3.0
1,335,033 + 1.5
1,335,036 + -0.3
1,335,047 - 1.5
1,335,066 + -1.2
1,335,103 + 0.6
1,335,103 + 2.1
1,335,107 + -0.1
1,335,114 + 0.3
1,335,114 + -0.1
1,335,114 + -0.2
1,335,119 - 0.5
1,335,127 - 1.1
1,335,134 - 0.8
1,335,147 - 1.0
1,335,148 + 0.2
1,335,153 - -2.5
1,335,153 - -0.2
1,335,154 + -0.4
1,335,156 + -0.3
1,335,157 - 0.8
1,335,158 - 2.2
1,335,161 + 1.1
1,335,166 - 0.1
1,335,167 + -0.1
1,335,177 - -0.4
1,335,179 + 0.1
1,335,181 - -0.3
1,335,182 + -0.9
1,335,182 - 0.2
1,335,184 - -0.6
1,335,189 + 0.3
1,335,193 - 0.1
1,335,196 + 0.5
1,335,197 - 1.0
1,335,214 + -0.1
1,335,251 - -0.1
1,335,256 + 1.0
1,335,260 + 0.3
1,335,260 + 0.1
1,335,267 - 0.8
1,335,274 + -0.5
1,335,280 + 1.7
1,335,293 + 0.5
1,335,296 + -1.2
1,335,305 - -0.7
1,335,309 - 1.4
1,335,317 - 0.8
1,335,317 - -0.2
1,335,322 + 1.2
1,335,336 + 0.1
1,335,336 + 2.5
1,335,336 + -0.0
1,335,336 + 0.4
1,335,346 + 1.7
1,335,383 + 1.7
1,335,471 - -1.2
1,335,477 + 2.3
1,335,668 - -1.2
1,335,669 + -0.1
1,335,779 - 15013 mRNA_6645 0.13 1.2
1,336,071 + 15013 mRNA_6645 0.29 -1.2
1,336,180 - 15013 mRNA_6645 0.36 -0.9
1,336,198 + 15013 mRNA_6645 0.37 0.4
1,336,214 - 15013 mRNA_6645 0.38 0.2
1,336,367 + 15013 mRNA_6645 0.46 -1.3
1,336,371 + 15013 mRNA_6645 0.46 1.8
1,336,476 - 15013 mRNA_6645 0.52 0.3
1,337,066 - 15013 mRNA_6645 0.86 -0.7
1,337,100 + 15013 mRNA_6645 0.88 0.2
1,337,179 + 0.3
1,337,225 + -1.9
1,337,500 + -1.7
1,337,509 + -0.3
1,337,545 - -0.1
1,337,553 + -0.1
1,337,636 + 0.1
1,337,812 + -0.0
1,337,954 + 0.2
1,338,256 - 15014 mRNA_6646 0.16 1.4