Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6548

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6547: 14915 - KOG3040 Predicted sugar phosphatase (HAD superfamily), at 1053521 to 1054436 14915 mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1055237 to 1061964 14916 mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1062959 to 1066157 14917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,054,493 + 1.1
1,054,661 + 1.4
1,054,788 + -0.0
1,054,793 - 0.4
1,054,798 - 0.4
1,054,807 + 1.6
1,054,814 + 0.4
1,054,816 - 0.6
1,054,820 + -0.0
1,054,822 + 0.4
1,054,825 + -0.3
1,054,828 + 0.8
1,054,828 + -0.1
1,054,833 + 0.1
1,054,840 + -0.8
1,054,874 - 0.1
1,054,892 - 0.1
1,054,899 + -0.5
1,054,982 - 0.7
1,054,999 - 0.2
1,055,026 + 1.2
1,055,026 - -0.2
1,055,149 - 0.6
1,055,179 + 0.7
1,055,441 + 0.2
1,055,742 + -0.0
1,056,073 + 14916 mRNA_6548 0.12 -0.5
1,056,150 + 14916 mRNA_6548 0.14 2.0
1,056,225 + 14916 mRNA_6548 0.15 0.6
1,056,722 + 14916 mRNA_6548 0.22 -0.0
1,056,839 + 14916 mRNA_6548 0.24 1.9
1,056,929 + 14916 mRNA_6548 0.25 2.0
1,056,982 + 14916 mRNA_6548 0.26 -0.4
1,057,356 + 14916 mRNA_6548 0.31 0.6
1,057,410 + 14916 mRNA_6548 0.32 0.3
1,057,491 + 14916 mRNA_6548 0.34 0.4
1,058,062 - 14916 mRNA_6548 0.42 -1.2
1,058,090 + 14916 mRNA_6548 0.42 0.2
1,058,524 - 14916 mRNA_6548 0.49 1.8
1,058,867 + 14916 mRNA_6548 0.54 2.0
1,058,943 - 14916 mRNA_6548 0.55 1.7
1,059,059 + 14916 mRNA_6548 0.57 0.1
1,059,224 + 14916 mRNA_6548 0.59 -0.3
1,059,390 + 14916 mRNA_6548 0.62 0.8
1,059,690 - 14916 mRNA_6548 0.66 1.4
1,059,856 + 14916 mRNA_6548 0.69 -0.2
1,059,989 - 14916 mRNA_6548 0.71 0.1
1,060,161 - 14916 mRNA_6548 0.73 -0.1
1,060,242 - 14916 mRNA_6548 0.74 0.4
1,060,252 - 14916 mRNA_6548 0.75 -1.2
1,060,265 + 14916 mRNA_6548 0.75 0.8
1,060,294 - 14916 mRNA_6548 0.75 -0.6
1,060,602 + 14916 mRNA_6548 0.80 0.3
1,060,834 - 14916 mRNA_6548 0.83 1.6
1,061,010 - 14916 mRNA_6548 0.86 1.4
1,061,122 + 14916 mRNA_6548 0.87 -1.2
1,061,761 + -0.0
1,062,022 - 0.3
1,062,097 - 2.1
1,062,161 - 0.1
1,062,172 + 1.1
1,062,602 + 2.1
1,062,730 + 0.7
1,062,878 - -0.1
1,062,890 - -0.7
1,062,926 - 1.9