Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6345

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592028 to 595751 14712 mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596038 to 599020 14713 mRNA_6346: 14714 - HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335, at 599677 to 600627 14714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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595,297 + 14712 mRNA_6344 0.88 0.1
595,444 - 0.4
595,604 + 0.6
595,605 + 0.5
595,623 + 2.0
596,135 + 0.6
596,920 + 14713 mRNA_6345 0.30 0.4
597,206 + 14713 mRNA_6345 0.39 0.5
597,312 + 14713 mRNA_6345 0.43 2.6
597,482 + 14713 mRNA_6345 0.48 0.3
597,966 - 14713 mRNA_6345 0.65 0.1
597,979 + 14713 mRNA_6345 0.65 0.3
598,531 - 14713 mRNA_6345 0.84 2.6
598,729 - -0.6
599,415 - 2.0
599,418 - 1.3
599,419 + 0.8
599,420 + -0.0
599,432 + -0.6
599,450 + -0.0
599,451 + -0.4
599,468 - -1.6
599,474 - -0.6
599,482 + -0.5
599,482 - -1.2
599,483 - -0.7
599,484 + 1.4
599,487 + 0.6
599,487 - -0.0
599,489 + -1.1
599,588 + 1.1
599,605 + 0.2
599,609 - 2.2
599,609 - 0.7
599,631 - -0.6
599,663 - 0.2
599,679 + -1.4
599,679 + -0.6
599,735 - 1.7
599,748 + 0.8
599,767 - -0.7
599,837 + 14714 mRNA_6346 0.17 2.6
599,854 + 14714 mRNA_6346 0.19 -0.2
599,859 - 14714 mRNA_6346 0.19 1.2
599,876 + 14714 mRNA_6346 0.21 -0.0
599,877 - 14714 mRNA_6346 0.21 1.9
599,898 - 14714 mRNA_6346 0.23 1.2