Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5966

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5965: 14333 - Hypothetical Protein, at 1344159 to 1346250 14333 mRNA_5966: 14334 - KOG1950 Glycosyl transferase, family 8 - glycogenin, at 1346683 to 1347941 14334 mRNA_5967: 14335 - Hypothetical Protein, at 1348034 to 1349199 14335

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,345,713 - 14333 mRNA_5965 0.74 -3.0
1,345,718 + 14333 mRNA_5965 0.75 0.3
1,345,831 - 14333 mRNA_5965 0.80 0.3
1,345,999 - 14333 mRNA_5965 0.88 -0.3
1,346,002 + 14333 mRNA_5965 0.88 0.2
1,346,005 + 14333 mRNA_5965 0.88 0.4
1,346,007 + 14333 mRNA_5965 0.88 0.4
1,346,008 - 14333 mRNA_5965 0.88 1.4
1,346,029 + 14333 mRNA_5965 0.89 1.1
1,346,038 + 14333 mRNA_5965 0.90 0.9
1,346,160 - 0.2
1,346,169 - 0.6
1,346,179 + 0.0
1,346,194 + 2.7
1,346,309 + 2.0
1,346,321 - 0.1
1,346,322 + 0.1
1,346,330 - 0.5
1,346,357 - 1.1
1,346,455 - -0.0
1,346,488 - 0.1
1,346,490 + -0.8
1,346,492 + 0.7
1,346,495 + -0.4
1,346,501 - 0.8
1,346,503 + -0.3
1,346,510 + 0.8
1,346,510 - -0.0
1,346,511 + -0.7
1,346,516 + 0.1
1,346,551 - 1.0
1,346,552 - 1.3
1,346,557 - 1.0
1,346,558 + 0.9
1,346,560 + 2.7
1,346,581 + 0.4
1,346,582 - 0.5
1,346,583 - -0.3
1,346,589 - 1.4
1,346,590 + 0.8
1,346,590 + 1.6
1,346,592 + 2.2
1,346,595 - 1.1
1,346,596 - 1.2
1,346,598 - 0.1
1,346,600 - -0.0
1,346,609 - 1.1
1,346,610 - -0.5
1,346,612 + 0.6
1,346,617 - 0.3
1,346,623 + 0.8
1,346,624 + 0.5
1,346,626 + -0.1
1,346,628 + 0.9
1,346,628 - -0.6
1,346,646 - -0.6
1,346,750 - 1.8
1,346,774 + 1.1
1,346,786 + 0.0
1,346,801 - -0.2
1,346,951 + 14334 mRNA_5966 0.21 -0.6
1,347,187 - 14334 mRNA_5966 0.40 1.2
1,347,380 + 14334 mRNA_5966 0.55 -1.3
1,347,520 - 14334 mRNA_5966 0.66 0.5
1,348,047 + -0.0
1,348,095 - -0.1
1,348,240 - 14335 mRNA_5967 0.18 0.2
1,348,262 - 14335 mRNA_5967 0.20 -0.0
1,348,278 + 14335 mRNA_5967 0.21 1.4
1,348,422 + 14335 mRNA_5967 0.33 1.7
1,348,524 + 14335 mRNA_5967 0.42 -0.6
1,348,691 + 14335 mRNA_5967 0.56 -0.2
1,348,706 + 14335 mRNA_5967 0.58 0.6
1,348,737 - 14335 mRNA_5967 0.60 0.8