Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5469

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5467: 13835 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 165116 to 166451 13835 mRNA_5468: 13836 - Hypothetical Protein, at 166457 to 167011 13836 mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167116 to 168617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168838 to 170246 13838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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166,171 + 13835 mRNA_5467 0.79 0.3
166,381 + 2.3
166,642 - 13836 mRNA_5468 0.33 2.0
166,650 + 13836 mRNA_5468 0.35 -1.5
166,749 + 13836 mRNA_5468 0.53 0.2
166,754 + 13836 mRNA_5468 0.54 0.7
166,772 - 13836 mRNA_5468 0.57 -0.2
166,783 - 13836 mRNA_5468 0.59 1.1
166,939 + 13836 mRNA_5468 0.87 -0.4
167,478 + 13837 mRNA_5469 0.24 -0.6
167,978 + 13837 mRNA_5469 0.57 -0.5
168,119 - 13837 mRNA_5469 0.67 0.8
168,167 + 13837 mRNA_5469 0.70 -0.1
168,235 - 13837 mRNA_5469 0.75 -1.0
168,362 - 13837 mRNA_5469 0.83 -2.5
168,376 - 13837 mRNA_5469 0.84 -0.8
168,382 + 13837 mRNA_5469 0.84 1.4
168,382 + 13837 mRNA_5469 0.84 0.2
168,394 + 13837 mRNA_5469 0.85 0.2
168,502 + 1.1
168,637 - -0.8
168,850 + -0.0
169,306 + 13838 mRNA_5470 0.33 0.6
169,423 + 13838 mRNA_5470 0.42 -0.0
169,423 + 13838 mRNA_5470 0.42 -0.9
169,423 - 13838 mRNA_5470 0.42 1.4
169,450 - 13838 mRNA_5470 0.43 1.9
169,571 - 13838 mRNA_5470 0.52 0.6
169,587 + 13838 mRNA_5470 0.53 -0.0
169,591 + 13838 mRNA_5470 0.53 1.1