Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5243

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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246,283 - 1.8
246,293 + -0.9
246,297 + 1.3
246,306 + -0.1
246,447 + 0.4
246,451 + 0.6
246,459 + 0.5
246,477 + 1.8
246,597 - -0.8
246,601 + 0.2
246,608 + -0.5
246,612 - 1.4
246,613 + 1.7
246,613 - -0.3
246,614 + 1.5
246,626 - 0.4
246,630 + -1.5
246,631 - 0.3
246,634 + -0.6
246,636 + -0.4
246,664 + 0.6
246,677 - 0.0
246,719 - -0.3
246,729 + 1.6
246,734 - -0.0
246,736 + -0.0
246,736 + 1.8
246,742 - -0.6
246,750 + 1.6
246,752 + -0.0
246,757 + -0.5
246,878 + 0.6
246,934 + -0.0
246,936 + -0.1
246,957 + -0.4
246,957 - -0.1
246,960 + 0.1
246,961 - 1.7
246,961 + 2.3
246,962 - -0.4
246,963 + 0.6
246,966 + 1.2
246,970 - 1.0
246,971 - -0.2
246,974 - 0.1
246,976 + 0.2
246,984 + 1.4
246,986 - 0.1
246,987 + 0.5
246,988 - 1.0
246,993 + 2.3
246,998 + 0.3
247,082 - 0.3
247,144 + 1.6
247,274 + 1.0
247,287 + -0.3
247,287 + 0.6
247,293 + 0.1
247,426 + -1.8
247,437 - -2.3
247,447 - -2.3
247,574 + -0.3
247,705 + 13611 mRNA_5243 0.13 1.5
248,025 + 13611 mRNA_5243 0.21 1.5
248,229 - 13611 mRNA_5243 0.27 -1.1
248,275 - 13611 mRNA_5243 0.28 1.5
248,450 + 13611 mRNA_5243 0.33 1.4
248,569 + 13611 mRNA_5243 0.36 -1.6
248,876 + 13611 mRNA_5243 0.44 -0.8
248,906 + 13611 mRNA_5243 0.44 0.8
249,144 - 13611 mRNA_5243 0.51 0.1
249,180 + 13611 mRNA_5243 0.52 0.4
249,324 - 13611 mRNA_5243 0.55 -0.0
249,768 + 13611 mRNA_5243 0.67 1.4
250,029 - 13611 mRNA_5243 0.74 -0.4
250,367 + 13611 mRNA_5243 0.82 -0.3
250,466 - 13611 mRNA_5243 0.85 1.6
250,902 - 0.7
251,028 - 0.4
251,062 - 0.5
251,190 - 0.5
251,197 - -0.5
251,216 - 0.6
251,218 + 1.0
251,225 - 0.3
251,231 + 1.8
251,233 - 0.0
251,241 + 2.1
251,351 + -2.5
251,354 - 0.6
251,356 - -0.5
251,356 - -1.4
251,365 - 0.9
251,366 + 0.6
251,368 + 1.4
251,369 - 0.1
251,372 + 1.7
251,372 - 1.7
251,373 + 0.6
251,375 - 1.4
251,388 + -0.5
251,392 + -0.3
251,397 - 0.4
251,412 - 0.0
251,414 + 1.3
251,421 - 1.2
251,423 - -0.2
251,425 + -0.7
251,528 + -0.4
251,535 + -2.4
251,537 - 0.8
251,553 + -0.1
251,560 - 0.1
251,561 - 1.0
251,681 + 0.1
251,685 + 0.3
251,702 + -0.3
251,719 + 0.2
251,753 + 0.2
251,755 - 1.1
251,810 - 1.1
251,827 - -1.3
251,835 + -0.8