Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5239

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235141 to 236473 13606 mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236624 to 237646 13607 mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238020 to 238702 13608

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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235,710 - 13606 mRNA_5238 0.43 -0.4
235,785 - 13606 mRNA_5238 0.48 1.6
236,125 + 13606 mRNA_5238 0.74 0.5
236,295 + 13606 mRNA_5238 0.87 0.9
236,453 + 2.2
236,630 - 0.6
236,723 - -0.1
236,734 + 13607 mRNA_5239 0.11 0.5
236,743 + 13607 mRNA_5239 0.12 0.6
236,873 - 13607 mRNA_5239 0.24 1.1
237,009 - 13607 mRNA_5239 0.38 0.6
237,342 + 13607 mRNA_5239 0.70 0.3
237,776 - 0.9
237,785 - 0.6
237,799 - 1.1
237,907 + -3.1
238,003 + 1.6
238,018 - -1.3
238,068 - 2.9
238,073 - -0.6
238,221 + 13608 mRNA_5240 0.29 0.8
238,228 - 13608 mRNA_5240 0.30 1.3
238,509 - 13608 mRNA_5240 0.72 0.2
238,527 + 13608 mRNA_5240 0.74 -0.1