Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5001

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5000: 13368 - K16302 CNNM metal transporter CNNM, at 1505561 to 1508084 13368 mRNA_5001: 13369 - K00649 GNPAT glyceronephosphate O-acyltransferase, at 1508431 to 1511895 13369

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,507,572 + 13368 mRNA_5000 0.80 -0.7
1,507,746 + 13368 mRNA_5000 0.87 -0.0
1,508,135 + 0.4
1,508,274 + 0.4
1,508,299 + -0.5
1,508,305 + 0.5
1,508,307 + -0.0
1,508,312 + 0.4
1,508,596 + -0.7
1,509,020 + 13369 mRNA_5001 0.17 -0.3
1,509,273 - 13369 mRNA_5001 0.24 -0.6
1,509,281 + 13369 mRNA_5001 0.25 1.6
1,509,285 + 13369 mRNA_5001 0.25 -1.2
1,509,457 - 13369 mRNA_5001 0.30 0.7
1,509,471 - 13369 mRNA_5001 0.30 0.1
1,509,530 + 13369 mRNA_5001 0.32 0.4
1,509,582 - 13369 mRNA_5001 0.33 0.3
1,509,597 + 13369 mRNA_5001 0.34 0.8
1,509,722 - 13369 mRNA_5001 0.37 0.7
1,509,854 + 13369 mRNA_5001 0.41 -0.1
1,509,887 + 13369 mRNA_5001 0.42 0.9
1,510,439 - 13369 mRNA_5001 0.58 -0.1
1,510,448 - 13369 mRNA_5001 0.58 0.1
1,510,759 - 13369 mRNA_5001 0.67 -0.6
1,511,053 + 13369 mRNA_5001 0.76 0.2
1,511,113 + 13369 mRNA_5001 0.77 1.1
1,511,181 + 13369 mRNA_5001 0.79 1.3
1,511,498 - 13369 mRNA_5001 0.89 1.0
1,511,506 + 13369 mRNA_5001 0.89 0.3
1,511,785 - 1.4
1,511,959 - 2.4
1,512,087 + 0.2
1,512,089 - 1.6
1,512,099 - 0.4
1,512,114 + 0.7
1,512,232 - 1.5
1,512,233 + 0.1
1,512,236 - 1.5
1,512,249 - 1.4
1,512,277 + 0.1
1,512,294 + 0.8
1,512,390 + 1.4
1,512,392 - -0.1
1,512,414 - -0.5
1,512,422 + -0.3
1,512,551 + 0.1
1,512,551 + 1.3
1,512,553 + 0.5
1,512,830 - -1.1