Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4712

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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829,970 - 13079 mRNA_4711 0.82 -0.2
830,076 + 13079 mRNA_4711 0.85 1.7
830,162 + 13079 mRNA_4711 0.87 -0.4
830,411 - 0.7
830,518 - -0.4
830,525 + 1.9
830,527 - 1.4
830,644 + -2.3
830,794 + -0.1
830,943 - -0.1
831,409 + 13080 mRNA_4712 0.15 -1.1
831,521 - 13080 mRNA_4712 0.18 -0.0
831,703 - 13080 mRNA_4712 0.24 1.0
831,848 + 13080 mRNA_4712 0.29 2.7
832,424 - 13080 mRNA_4712 0.47 0.3
832,562 + 13080 mRNA_4712 0.52 -1.4
832,575 + 13080 mRNA_4712 0.52 -0.0
832,709 - 13080 mRNA_4712 0.57 0.8
832,841 - 13080 mRNA_4712 0.61 1.9
832,886 - 13080 mRNA_4712 0.62 2.9
833,009 - 13080 mRNA_4712 0.66 2.2
833,158 - 13080 mRNA_4712 0.71 0.4
833,589 - 13080 mRNA_4712 0.85 1.1
833,737 + 13080 mRNA_4712 0.90 1.7
833,744 - 13080 mRNA_4712 0.90 2.1
833,799 + 1.5
833,805 - 1.3
833,861 - -1.7
833,877 - 3.4
833,888 + 1.5
833,889 - 0.8
833,892 + 1.4
833,907 + 1.0
833,908 - 0.3
833,909 + 1.6
833,915 - 1.1
834,029 + 0.8
834,035 - 1.0
834,045 - 0.6
834,181 - 0.3
834,190 - 0.3
834,200 - 0.3
834,201 - 0.8
834,201 + 0.2
834,201 + -0.5
834,205 + 0.5
834,216 + 0.4
834,222 + 0.0
834,344 - 3.4
834,350 + 1.4
834,474 + -0.8
834,489 + 1.6