Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4408

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109306 to 110822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111207 to 112706 12776 mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113128 to 114818 12777

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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110,390 - 12775 mRNA_4407 0.71 -0.2
110,534 + 12775 mRNA_4407 0.81 -0.7
110,566 + 12775 mRNA_4407 0.83 -0.5
110,571 - 12775 mRNA_4407 0.83 1.5
110,986 + -0.6
110,993 - -0.2
111,649 - 12776 mRNA_4408 0.29 1.5
111,713 - 12776 mRNA_4408 0.34 1.6
112,123 - 12776 mRNA_4408 0.61 0.6
112,169 + 12776 mRNA_4408 0.64 1.0
112,435 - 12776 mRNA_4408 0.82 0.6
112,436 + 12776 mRNA_4408 0.82 -0.1
112,560 - 1.3
112,745 - 0.4
112,888 + -0.1
112,998 - 0.3
113,025 + 2.0
113,046 - -1.6
113,055 - 0.6
113,075 + -0.1
113,075 - 0.2
113,077 + 0.4
113,153 + -0.6
113,218 + 0.0
113,313 - 12777 mRNA_4409 0.11 0.9
113,567 + 12777 mRNA_4409 0.26 0.0
113,567 + 12777 mRNA_4409 0.26 0.0