Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4386

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754 mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71691 to 72315 12755

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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69,022 - 12753 mRNA_4385 0.65 1.5
69,030 + 12753 mRNA_4385 0.66 0.5
69,331 - 0.3
69,361 + 1.0
69,372 - -1.2
69,431 - 0.4
69,483 + -0.2
69,513 - -1.2
69,526 - 0.5
69,563 + 1.9
69,621 + -4.3
69,710 + 0.1
70,023 + -1.1
70,612 + 12754 mRNA_4386 0.45 -0.2
70,720 - 12754 mRNA_4386 0.53 -0.5
70,863 - 12754 mRNA_4386 0.64 -1.0
70,864 - 12754 mRNA_4386 0.64 0.7
70,894 + 12754 mRNA_4386 0.66 1.1
70,932 + 12754 mRNA_4386 0.69 -0.6
70,978 - 12754 mRNA_4386 0.73 -0.5
71,435 + 1.2
71,446 + 0.6
71,452 + 0.6
71,462 + -0.1
71,464 + -1.3
71,532 - 1.3
71,612 + 0.9
71,774 + 12755 mRNA_4387 0.13 0.4
72,184 + 12755 mRNA_4387 0.79 -0.7
72,219 + 12755 mRNA_4387 0.84 1.0