Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4346

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4345: 12713 - K04706 PIAS1 E3 SUMO-protein ligase PIAS1, at 1959851 to 1962070 12713 mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1962834 to 1965398 12714 mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1965895 to 1967093 12715

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,962,100 - -0.4
1,962,528 + 0.7
1,962,547 + 0.9
1,962,719 + 0.1
1,962,802 - 0.4
1,962,821 - 0.7
1,962,828 + 1.4
1,962,829 + -0.7
1,962,843 - 0.4
1,962,967 + 0.6
1,962,980 + 1.0
1,962,992 + 0.9
1,963,114 - 12714 mRNA_4346 0.11 -0.1
1,963,114 - 12714 mRNA_4346 0.11 -0.0
1,963,130 + 12714 mRNA_4346 0.12 1.5
1,963,139 - 12714 mRNA_4346 0.12 -0.3
1,963,245 + 12714 mRNA_4346 0.16 1.1
1,963,251 - 12714 mRNA_4346 0.16 0.4
1,963,579 - 12714 mRNA_4346 0.29 -0.5
1,963,683 - 12714 mRNA_4346 0.33 1.5
1,963,689 + 12714 mRNA_4346 0.33 0.3
1,963,735 + 12714 mRNA_4346 0.35 0.6
1,964,051 + 12714 mRNA_4346 0.47 1.2
1,964,164 + 12714 mRNA_4346 0.52 0.8
1,964,167 - 12714 mRNA_4346 0.52 0.4
1,964,185 + 12714 mRNA_4346 0.53 -0.5
1,964,195 + 12714 mRNA_4346 0.53 0.5
1,964,473 - 12714 mRNA_4346 0.64 -1.8
1,964,791 - 12714 mRNA_4346 0.76 1.4
1,965,622 - -0.3
1,965,647 - -0.7
1,965,658 + 0.4
1,965,941 - -0.5
1,965,949 + 0.5
1,966,071 + 12715 mRNA_4347 0.15 0.4
1,966,144 - 12715 mRNA_4347 0.21 0.2