Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4309

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1863186 to 1865063 12676 mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1865492 to 1868533 12677

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,864,946 + -0.7
1,864,963 + 0.3
1,865,082 + -1.5
1,865,088 - 0.3
1,865,092 - -0.3
1,865,093 - 1.3
1,865,096 - 1.6
1,865,109 + -0.5
1,865,109 - 1.1
1,865,110 + 0.2
1,865,111 + 0.0
1,865,130 - 0.9
1,865,150 + -1.1
1,865,150 - -2.0
1,865,151 + -0.7
1,865,158 - 0.2
1,865,160 + 0.4
1,865,193 + -0.5
1,865,195 - 0.3
1,865,201 + 0.8
1,865,201 + -0.2
1,865,205 + 0.4
1,865,221 + 0.2
1,865,230 - -0.3
1,865,231 + -0.1
1,865,335 - 1.2
1,865,340 - 0.7
1,865,363 - -0.1
1,865,364 + 0.5
1,865,509 - -0.5
1,866,083 + 12677 mRNA_4309 0.19 -0.8
1,866,371 - 12677 mRNA_4309 0.29 1.3
1,866,380 + 12677 mRNA_4309 0.29 0.9
1,866,639 - 12677 mRNA_4309 0.38 -0.2
1,866,644 - 12677 mRNA_4309 0.38 0.4
1,866,699 + 12677 mRNA_4309 0.40 0.3
1,866,815 - 12677 mRNA_4309 0.43 -0.1
1,867,129 + 12677 mRNA_4309 0.54 0.1
1,867,236 - 12677 mRNA_4309 0.57 0.2
1,867,383 + 12677 mRNA_4309 0.62 0.1
1,867,417 - 12677 mRNA_4309 0.63 -0.0
1,867,698 + 12677 mRNA_4309 0.73 -2.8
1,867,706 - 12677 mRNA_4309 0.73 0.2
1,867,710 - 12677 mRNA_4309 0.73 0.8
1,867,728 + 12677 mRNA_4309 0.74 1.5
1,868,133 + 12677 mRNA_4309 0.87 0.5
1,868,133 + 12677 mRNA_4309 0.87 0.4
1,868,410 + -0.7
1,868,624 - 0.6
1,869,043 - 0.6
1,869,141 - -0.4
1,869,141 - -1.8
1,869,311 - -0.5
1,869,476 + -0.4