Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4251

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1711024 to 1714296 12618 mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1714750 to 1715768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1715834 to 1717453 12620

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,714,252 - 2.7
1,714,516 - 1.5
1,714,567 - -0.0
1,714,703 + 1.2
1,714,851 + 0.7
1,714,852 + 12619 mRNA_4251 0.10 -0.7
1,714,856 + 12619 mRNA_4251 0.10 0.6
1,714,877 - 12619 mRNA_4251 0.12 1.0
1,714,931 - 12619 mRNA_4251 0.18 0.9
1,715,148 - 12619 mRNA_4251 0.39 0.7
1,715,426 - 12619 mRNA_4251 0.66 0.4
1,715,592 + 12619 mRNA_4251 0.83 -0.3
1,715,613 - 12619 mRNA_4251 0.85 0.4
1,715,884 + 0.4
1,716,434 + 12620 mRNA_4252 0.37 -0.1