Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4219

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1638497 to 1642867 12586 mRNA_4219: 12587 - HMMPfam-Protein phosphatase inhibitor 2 (IPP-2)-PF04979, at 1642992 to 1644310 12587 mRNA_4220: 12588 - K19932 NCS1 neuronal calcium sensor 1, at 1644542 to 1645935 12588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,642,055 + 12586 mRNA_4218 0.81 0.9
1,642,274 + 12586 mRNA_4218 0.86 0.9
1,642,378 - 12586 mRNA_4218 0.89 -0.2
1,642,475 - -1.3
1,642,511 + 2.6
1,642,636 - 0.6
1,642,652 + -0.0
1,642,798 + 0.9
1,642,798 - -1.0
1,642,798 - 0.4
1,642,799 - -0.3
1,642,802 + -0.3
1,642,807 - 0.5
1,642,812 + 2.1
1,642,918 - 0.2
1,642,925 + -1.1
1,642,933 - 1.2
1,642,935 + 1.2
1,642,937 + 0.3
1,642,938 + 0.3
1,642,941 + 0.3
1,642,945 - -0.4
1,642,953 + 0.6
1,643,066 + -0.2
1,643,095 + 0.2
1,643,522 + 12587 mRNA_4219 0.40 1.5
1,643,536 - 12587 mRNA_4219 0.41 0.1
1,643,538 - 12587 mRNA_4219 0.41 0.6
1,643,569 - 12587 mRNA_4219 0.44 2.1
1,643,662 - 12587 mRNA_4219 0.51 -2.8
1,643,822 - 12587 mRNA_4219 0.63 -0.2
1,643,952 + 12587 mRNA_4219 0.73 -0.3
1,644,098 - 12587 mRNA_4219 0.84 1.2
1,644,383 - 0.2
1,644,401 - -0.1
1,644,515 + 0.6
1,644,969 - 12588 mRNA_4220 0.31 1.2