Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4196

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4195: 12563 - HMMPfam-Protein of unknown function (DUF2962)-PF11176, at 1585796 to 1586681 12563 mRNA_4196: 12564 - K12343 SRD5A1 3-oxo-5-alpha-steroid 4-dehydrogenase 1, at 1586838 to 1587953 12564 mRNA_4197: 12565 - K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase, at 1588332 to 1590437 12565

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,586,712 + 0.0
1,586,718 + -0.3
1,586,725 + -0.5
1,586,863 - 1.1
1,586,874 - 0.2
1,587,157 + 12564 mRNA_4196 0.29 -0.0
1,587,159 - 12564 mRNA_4196 0.29 -0.3
1,587,181 - 12564 mRNA_4196 0.31 1.4
1,587,458 - 12564 mRNA_4196 0.56 0.1
1,587,754 - 12564 mRNA_4196 0.82 -0.1
1,587,901 + -1.2
1,587,921 + -1.6
1,588,050 - 1.4
1,588,052 - -1.2
1,588,054 - -0.5
1,588,072 + -0.0
1,588,187 + -0.3
1,588,198 - 2.5
1,588,224 - -0.9