Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4178

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4177: 12545 - K15356 VRG4, GONST1 GDP-mannose transporter, at 1543096 to 1544844 12545 mRNA_4178: 12546 - KOG1337 N-methyltransferase, at 1545010 to 1546616 12546 mRNA_4179: 12547 - KOG0429 Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death, at 1547338 to 1548132 12547

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,544,556 - 12545 mRNA_4177 0.83 2.5
1,544,730 + 0.1
1,544,747 - 0.8
1,544,847 - 0.2
1,544,850 - -0.3
1,544,852 + 0.3
1,544,867 + 0.8
1,544,903 + 0.1
1,545,011 - -0.4
1,545,019 + 0.1
1,545,020 - 0.2
1,545,021 + 0.1
1,545,048 - -2.9
1,545,061 - 0.1
1,545,064 - 0.3
1,545,065 - 0.0
1,545,080 + -1.4
1,545,183 - 12546 mRNA_4178 0.11 0.8
1,545,354 + 12546 mRNA_4178 0.21 0.7
1,545,536 + 12546 mRNA_4178 0.33 -1.6
1,545,652 + 12546 mRNA_4178 0.40 0.3
1,545,809 + 12546 mRNA_4178 0.50 1.4
1,546,072 - 12546 mRNA_4178 0.66 -1.3
1,546,078 + 12546 mRNA_4178 0.66 -1.2
1,546,219 - 12546 mRNA_4178 0.75 0.5
1,546,321 - 12546 mRNA_4178 0.82 0.4
1,546,505 - -0.6
1,546,893 - 0.0
1,547,249 + -0.2
1,547,365 - 1.3
1,547,536 + 12547 mRNA_4179 0.25 0.9
1,547,537 + 12547 mRNA_4179 0.25 -2.2
1,547,554 - 12547 mRNA_4179 0.27 0.0