Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4174

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1535765 to 1540719 12542 mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1541206 to 1541936 12543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,534,796 + -0.7
1,534,819 - 0.5
1,534,852 - 1.3
1,534,896 - 1.1
1,535,167 + 0.6
1,535,222 + 1.4
1,535,276 - 0.0
1,535,276 + 0.4
1,535,692 - -1.0
1,535,888 + -0.4
1,535,891 + -1.6
1,536,048 + 1.1
1,536,048 - -0.2
1,536,105 + -1.3
1,536,163 + -1.2
1,536,338 - 12542 mRNA_4174 0.12 -0.9
1,536,592 + 12542 mRNA_4174 0.17 -0.5
1,537,195 - 12542 mRNA_4174 0.29 0.1
1,537,308 + 12542 mRNA_4174 0.31 -0.1
1,537,346 + 12542 mRNA_4174 0.32 -0.3
1,537,430 - 12542 mRNA_4174 0.34 -0.5
1,537,498 + 12542 mRNA_4174 0.35 -0.3
1,538,198 + 12542 mRNA_4174 0.49 -0.4
1,538,262 - 12542 mRNA_4174 0.50 1.4
1,538,625 - 12542 mRNA_4174 0.58 -0.6
1,538,651 + 12542 mRNA_4174 0.58 -0.1
1,539,051 + 12542 mRNA_4174 0.66 0.5
1,539,335 - 12542 mRNA_4174 0.72 -0.3
1,539,375 + 12542 mRNA_4174 0.73 0.7
1,539,563 - 12542 mRNA_4174 0.77 0.3
1,539,923 + 12542 mRNA_4174 0.84 -0.8
1,540,053 + 12542 mRNA_4174 0.87 -1.3
1,540,338 + 0.9
1,540,481 - 0.9
1,540,513 - -0.6
1,540,629 - -0.1
1,540,648 + -1.1
1,540,689 + -0.1
1,540,783 + 0.9
1,540,785 + -0.6
1,540,793 - -0.4
1,540,794 - 0.0
1,540,795 - 0.4
1,540,798 + 0.1
1,540,824 + 1.3
1,540,827 + -0.1
1,540,934 - -0.9
1,540,947 - -0.8
1,540,953 + 2.3
1,540,964 - -1.8
1,540,973 + -0.7
1,541,071 + -1.3
1,541,250 + -1.6
1,541,393 - 12543 mRNA_4175 0.26 -0.2
1,541,399 + 12543 mRNA_4175 0.26 -0.0
1,541,538 - 12543 mRNA_4175 0.45 1.1
1,541,575 + 12543 mRNA_4175 0.50 -0.6
1,541,661 + 12543 mRNA_4175 0.62 0.3
1,541,662 + 12543 mRNA_4175 0.62 -0.0
1,541,694 - 12543 mRNA_4175 0.67 0.2
1,541,704 - 12543 mRNA_4175 0.68 0.8