Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4170

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4170: 12538 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 1524974 to 1527080 12538 mRNA_4171: 12539 - KOG2806 Chitinase, at 1528014 to 1529581 12539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,524,073 - 3.4
1,524,235 - -1.1
1,524,252 + 1.3
1,524,359 + 2.5
1,524,489 + -0.1
1,524,644 - 2.0
1,525,038 + 0.6
1,525,367 + 12538 mRNA_4170 0.19 -0.1
1,525,522 - 12538 mRNA_4170 0.26 0.0
1,525,804 + 12538 mRNA_4170 0.39 0.3
1,525,831 + 12538 mRNA_4170 0.41 1.2
1,525,949 + 12538 mRNA_4170 0.46 0.9
1,525,984 - 12538 mRNA_4170 0.48 0.2
1,525,985 - 12538 mRNA_4170 0.48 -0.7
1,525,996 - 12538 mRNA_4170 0.49 1.2
1,526,033 - 12538 mRNA_4170 0.50 0.0
1,526,056 - 12538 mRNA_4170 0.51 1.6
1,526,197 - 12538 mRNA_4170 0.58 1.2
1,526,201 - 12538 mRNA_4170 0.58 -0.0
1,526,203 - 12538 mRNA_4170 0.58 -1.2
1,526,212 + 12538 mRNA_4170 0.59 1.0
1,526,239 + 12538 mRNA_4170 0.60 0.5
1,526,343 - 12538 mRNA_4170 0.65 -1.1
1,526,354 - 12538 mRNA_4170 0.65 0.6
1,526,421 - 12538 mRNA_4170 0.69 -1.1
1,526,513 - 12538 mRNA_4170 0.73 -0.0
1,526,522 - 12538 mRNA_4170 0.73 0.0
1,526,523 - 12538 mRNA_4170 0.74 2.3
1,526,535 - 12538 mRNA_4170 0.74 1.7
1,526,551 + 12538 mRNA_4170 0.75 0.4
1,526,557 - 12538 mRNA_4170 0.75 1.1
1,526,559 - 12538 mRNA_4170 0.75 -0.8
1,526,559 - 12538 mRNA_4170 0.75 0.8
1,526,570 + 12538 mRNA_4170 0.76 0.1
1,526,577 + 12538 mRNA_4170 0.76 -0.1
1,526,598 + 12538 mRNA_4170 0.77 0.2
1,526,598 - 12538 mRNA_4170 0.77 0.3
1,526,681 - 12538 mRNA_4170 0.81 2.4
1,526,705 - 12538 mRNA_4170 0.82 0.8
1,526,710 - 12538 mRNA_4170 0.82 0.2
1,526,718 + 12538 mRNA_4170 0.83 0.5
1,526,722 - 12538 mRNA_4170 0.83 0.6
1,526,821 + 12538 mRNA_4170 0.88 -0.3
1,526,847 - 12538 mRNA_4170 0.89 0.9
1,526,986 - 1.0
1,526,992 - -0.5
1,527,025 + 0.7
1,527,292 - -0.0
1,527,298 + -0.6
1,527,365 - -0.3
1,527,450 - 0.2
1,527,579 - 1.1
1,527,643 + -1.1
1,527,708 + 0.4