Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3858

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754082 to 757282 12225 mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757885 to 761783 12226 mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762082 to 763041 12227

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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756,935 - 12225 mRNA_3857 0.89 -0.7
757,046 + -1.2
757,414 + 1.4
757,514 - 0.1
757,514 + -0.7
757,681 + -2.1
757,945 - 1.3
757,947 - 1.2
758,100 + 0.3
758,250 - 1.0
758,293 + 12226 mRNA_3858 0.10 1.8
758,873 - 12226 mRNA_3858 0.25 0.5
758,885 + 12226 mRNA_3858 0.26 0.6
758,993 - 12226 mRNA_3858 0.28 -0.6
758,994 + 12226 mRNA_3858 0.28 1.9
759,151 + 12226 mRNA_3858 0.32 -0.1
759,173 - 12226 mRNA_3858 0.33 0.3
759,307 + 12226 mRNA_3858 0.36 0.1
759,844 + 12226 mRNA_3858 0.50 1.4
759,881 + 12226 mRNA_3858 0.51 0.2
759,896 + 12226 mRNA_3858 0.52 0.6
759,915 + 12226 mRNA_3858 0.52 -0.2
760,012 + 12226 mRNA_3858 0.55 0.2
761,221 + 12226 mRNA_3858 0.86 -0.5
761,481 - 1.2
761,511 - -0.4
761,590 - 0.6
761,650 + -0.4
761,838 + 1.2
762,365 - 12227 mRNA_3859 0.29 2.3
762,366 + 12227 mRNA_3859 0.30 1.4
762,379 + 12227 mRNA_3859 0.31 1.1
762,413 - 12227 mRNA_3859 0.34 0.6
762,552 + 12227 mRNA_3859 0.49 -0.2
762,570 + 12227 mRNA_3859 0.51 0.8
762,669 - 12227 mRNA_3859 0.61 0.6