Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3781

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565558 to 568249 12149 mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568603 to 571218 12150

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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564,642 - 0.3
564,762 + 0.4
565,145 + 0.4
565,147 - 1.1
565,418 + 0.4
565,424 + 0.3
565,723 - 1.8
565,848 - 12149 mRNA_3781 0.11 1.1
565,855 + 12149 mRNA_3781 0.11 1.8
565,992 + 12149 mRNA_3781 0.16 0.8
566,025 + 12149 mRNA_3781 0.17 1.5
566,494 - 12149 mRNA_3781 0.35 1.2
566,755 + 12149 mRNA_3781 0.44 0.1
567,303 - 12149 mRNA_3781 0.65 -1.6
567,481 + 12149 mRNA_3781 0.71 0.8
567,772 + 12149 mRNA_3781 0.82 1.7
568,071 - -0.9
568,201 + 0.2
568,201 - 0.3
568,331 - -0.0
568,340 - -0.1
568,351 - 1.0
568,362 - -0.2
568,368 + 1.1
568,378 + 0.5
568,386 - -0.7
568,500 - 0.6