Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3705

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073 mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400186 to 402852 12074

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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398,963 - 1.2
398,963 + -0.4
399,549 - 0.1
399,572 + -0.2
399,691 - -0.3
399,702 + 0.3
399,715 + 0.2
399,839 - 12073 mRNA_3705 0.24 -2.6
399,872 - 12073 mRNA_3705 0.31 1.1
399,874 + 12073 mRNA_3705 0.31 0.8
399,903 - 12073 mRNA_3705 0.37 -0.1
399,990 - 12073 mRNA_3705 0.56 0.8
400,000 - 12073 mRNA_3705 0.58 0.2
400,292 - 1.6
400,296 + -0.4
400,525 + 12074 mRNA_3706 0.13 -1.4
400,769 + 12074 mRNA_3706 0.22 0.0
400,992 - 12074 mRNA_3706 0.30 -0.1
401,166 + 12074 mRNA_3706 0.37 -1.0