Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3602

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149343 to 150921 11970 mRNA_3603: 11971 - K13628 iscA, ISCA1 iron-sulfur cluster assembly protein, at 151130 to 151909 11971

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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148,704 - 0.1
148,707 + -0.2
148,850 - 1.0
148,854 - -0.1
148,986 + 0.1
149,011 - 2.0
149,019 + -0.5
149,105 + 0.4
149,127 - 1.6
149,275 + -0.0
149,289 - -0.3
149,297 - 0.9
149,609 - 11970 mRNA_3602 0.17 0.5
149,910 + 11970 mRNA_3602 0.36 -0.2
150,227 + 11970 mRNA_3602 0.56 -1.1
150,472 + 11970 mRNA_3602 0.72 3.0
150,621 - 11970 mRNA_3602 0.81 -0.3
150,738 + 11970 mRNA_3602 0.88 1.0
150,759 + 11970 mRNA_3602 0.90 -0.7
150,900 - -0.6
150,928 - -1.1
150,937 - 0.2
150,938 + 1.1
150,942 + 1.5
151,050 + -1.9
151,052 + 0.2
151,058 + -0.9
151,083 - 1.6
151,094 + 0.2
151,110 + 2.1
151,111 - 0.4
151,118 + -0.3
151,118 - -0.5