Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3540

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4641 to 6092 11907 mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6477 to 8169 11908 mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8355 to 10759 11909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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5,498 + 11907 mRNA_3539 0.59 -0.3
5,519 - 11907 mRNA_3539 0.60 0.5
5,520 - 11907 mRNA_3539 0.61 3.2
5,535 - 11907 mRNA_3539 0.62 1.3
5,538 - 11907 mRNA_3539 0.62 0.3
5,575 + 11907 mRNA_3539 0.64 0.4
5,695 - 11907 mRNA_3539 0.73 -0.7
5,764 - 11907 mRNA_3539 0.77 -0.2
5,808 - 11907 mRNA_3539 0.80 -0.1
5,822 - 11907 mRNA_3539 0.81 -0.2
5,827 - 11907 mRNA_3539 0.82 0.2
5,838 - 11907 mRNA_3539 0.82 -1.1
5,842 - 11907 mRNA_3539 0.83 2.7
5,932 - 11907 mRNA_3539 0.89 -0.3
6,014 - -1.2
6,067 + -0.5
6,073 - 0.6
6,257 - 1.1
6,357 + 0.2
6,367 + -0.1
6,383 - 0.7
6,398 - 0.3
6,401 - 1.5
6,413 - 0.3
6,459 + 0.4
6,555 - 0.5
6,699 + 11908 mRNA_3540 0.13 0.8
6,850 - 11908 mRNA_3540 0.22 3.8
6,886 + 11908 mRNA_3540 0.24 1.0
7,439 + 11908 mRNA_3540 0.57 -1.3
7,439 + 11908 mRNA_3540 0.57 -0.7
7,441 - 11908 mRNA_3540 0.57 1.2
7,682 - 11908 mRNA_3540 0.71 0.3
7,740 - 11908 mRNA_3540 0.75 1.8
7,778 + 11908 mRNA_3540 0.77 -0.8
7,983 + 11908 mRNA_3540 0.89 0.5
8,056 + -0.6
8,120 + -0.3
8,123 - -0.1
8,179 - 0.4
8,311 - -0.4
8,312 + 0.7
8,313 - -0.5
8,336 + 1.9
8,340 + 0.3