Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3151

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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435,484 + 11518 mRNA_3150 0.35 -0.1
435,485 + 11518 mRNA_3150 0.35 2.4
435,564 - 11518 mRNA_3150 0.41 1.0
435,571 + 11518 mRNA_3150 0.42 0.6
435,684 - 11518 mRNA_3150 0.51 0.9
435,702 + 11518 mRNA_3150 0.52 0.9
435,718 - 11518 mRNA_3150 0.53 0.7
435,843 - 11518 mRNA_3150 0.63 0.8
435,865 + 11518 mRNA_3150 0.65 1.1
435,979 - 11518 mRNA_3150 0.73 0.7
436,001 - 11518 mRNA_3150 0.75 0.5
436,102 - 11518 mRNA_3150 0.83 0.3
436,241 + 2.4
436,445 + -0.0
436,643 + 0.7
436,712 - 11519 mRNA_3151 0.14 0.5
436,734 - 11519 mRNA_3151 0.16 0.1
436,799 + 11519 mRNA_3151 0.20 -0.1
436,895 + 11519 mRNA_3151 0.25 -0.3
436,901 + 11519 mRNA_3151 0.26 -0.7
437,009 - 11519 mRNA_3151 0.32 -0.5
437,041 + 11519 mRNA_3151 0.34 1.4
437,214 - 11519 mRNA_3151 0.45 0.1
437,264 + 11519 mRNA_3151 0.48 -0.1
437,296 + 11519 mRNA_3151 0.50 0.9
437,300 + 11519 mRNA_3151 0.50 -0.4
437,300 - 11519 mRNA_3151 0.50 0.4
437,303 - 11519 mRNA_3151 0.50 -0.8
437,315 - 11519 mRNA_3151 0.51 -1.1
437,328 - 11519 mRNA_3151 0.52 0.8
437,329 + 11519 mRNA_3151 0.52 1.5
437,445 - 11519 mRNA_3151 0.59 -1.0
437,445 - 11519 mRNA_3151 0.59 0.8
437,488 - 11519 mRNA_3151 0.62 -0.7
437,491 + 11519 mRNA_3151 0.62 -1.1
437,493 - 11519 mRNA_3151 0.62 0.3
437,504 + 11519 mRNA_3151 0.63 -0.5
437,524 - 11519 mRNA_3151 0.64 -0.2
437,547 - 11519 mRNA_3151 0.65 0.6
437,639 + 11519 mRNA_3151 0.71 0.4
437,650 + 11519 mRNA_3151 0.72 0.1
437,673 - 11519 mRNA_3151 0.73 0.3
437,673 + 11519 mRNA_3151 0.73 -0.6
437,682 - 11519 mRNA_3151 0.74 0.4
437,694 + 11519 mRNA_3151 0.74 -0.1
437,717 + 11519 mRNA_3151 0.76 0.9
437,736 - 11519 mRNA_3151 0.77 2.1
437,763 + 11519 mRNA_3151 0.79 0.6
437,781 + 11519 mRNA_3151 0.80 -0.7
437,786 - 11519 mRNA_3151 0.80 0.7
437,793 + 11519 mRNA_3151 0.81 2.0
437,803 - 11519 mRNA_3151 0.81 -0.1
437,811 + 11519 mRNA_3151 0.82 0.4
437,818 - 11519 mRNA_3151 0.82 0.7
437,818 - 11519 mRNA_3151 0.82 0.5
437,819 + 11519 mRNA_3151 0.82 0.5
437,820 - 11519 mRNA_3151 0.82 1.3
437,825 - 11519 mRNA_3151 0.83 0.6
437,826 - 11519 mRNA_3151 0.83 -0.3
437,828 - 11519 mRNA_3151 0.83 1.0
437,828 - 11519 mRNA_3151 0.83 -0.4
437,830 - 11519 mRNA_3151 0.83 -0.4
437,832 + 11519 mRNA_3151 0.83 0.6
437,833 - 11519 mRNA_3151 0.83 -0.2
437,835 - 11519 mRNA_3151 0.83 -1.6
437,836 - 11519 mRNA_3151 0.83 1.7
437,836 + 11519 mRNA_3151 0.83 0.2
437,836 + 11519 mRNA_3151 0.83 1.8
437,839 - 11519 mRNA_3151 0.83 -0.3
437,840 - 11519 mRNA_3151 0.83 0.1
437,840 - 11519 mRNA_3151 0.83 2.5
437,842 - 11519 mRNA_3151 0.84 0.2
437,843 + 11519 mRNA_3151 0.84 -0.6
437,844 - 11519 mRNA_3151 0.84 -0.1
437,845 + 11519 mRNA_3151 0.84 -1.2
437,846 - 11519 mRNA_3151 0.84 -0.1
437,847 + 11519 mRNA_3151 0.84 -0.6
437,847 + 11519 mRNA_3151 0.84 1.7
437,847 + 11519 mRNA_3151 0.84 1.3
437,847 + 11519 mRNA_3151 0.84 0.6
437,848 + 11519 mRNA_3151 0.84 -0.8
437,850 - 11519 mRNA_3151 0.84 0.3
437,850 + 11519 mRNA_3151 0.84 0.1
437,851 + 11519 mRNA_3151 0.84 0.4
437,851 + 11519 mRNA_3151 0.84 1.5
437,852 + 11519 mRNA_3151 0.84 1.0
437,853 + 11519 mRNA_3151 0.84 0.2
437,853 + 11519 mRNA_3151 0.84 0.5
437,853 - 11519 mRNA_3151 0.84 -0.3
437,854 - 11519 mRNA_3151 0.84 -2.0
437,855 + 11519 mRNA_3151 0.84 -0.7
437,855 + 11519 mRNA_3151 0.84 0.3
437,856 + 11519 mRNA_3151 0.84 0.7
437,857 + 11519 mRNA_3151 0.84 0.9
437,862 - 11519 mRNA_3151 0.85 0.5
437,866 + 11519 mRNA_3151 0.85 2.0
437,867 + 11519 mRNA_3151 0.85 -2.1
437,867 + 11519 mRNA_3151 0.85 1.0
437,868 - 11519 mRNA_3151 0.85 0.0
437,870 + 11519 mRNA_3151 0.85 0.5
437,870 - 11519 mRNA_3151 0.85 2.3
437,870 + 11519 mRNA_3151 0.85 0.8
437,872 + 11519 mRNA_3151 0.85 0.1
437,873 - 11519 mRNA_3151 0.85 -0.7
437,873 + 11519 mRNA_3151 0.85 0.5
437,874 + 11519 mRNA_3151 0.86 -0.8
437,874 + 11519 mRNA_3151 0.86 0.5
437,884 + 11519 mRNA_3151 0.86 0.0
437,897 + 11519 mRNA_3151 0.87 -0.9
437,905 - 11519 mRNA_3151 0.87 0.4
437,914 - 11519 mRNA_3151 0.88 0.6
437,920 + 11519 mRNA_3151 0.88 1.0
437,924 - 11519 mRNA_3151 0.89 1.6
437,927 - 11519 mRNA_3151 0.89 0.5
437,927 + 11519 mRNA_3151 0.89 0.5
437,936 + 11519 mRNA_3151 0.89 -0.1
437,936 - 11519 mRNA_3151 0.89 -0.3
437,940 + 11519 mRNA_3151 0.90 0.7
437,951 - 1.0
437,958 + -0.5
437,996 + 0.0
438,035 - 0.6
438,041 - 0.1
438,047 - 1.1
438,050 + -1.2
438,051 - 0.1
438,053 + -0.3
438,058 - 1.0
438,058 - -0.4
438,059 - 0.5
438,061 - -2.7
438,061 + 1.0
438,061 + 0.4
438,062 + -0.8
438,064 + -0.0
438,066 - 0.1
438,067 - -0.2
438,067 - 0.7
438,069 - 0.6
438,070 - 2.9
438,070 + -1.3
438,070 - 0.1
438,072 - -0.6
438,076 + 0.0
438,077 + -0.4
438,077 + 0.1
438,080 - 0.1
438,080 + 1.8
438,082 - -0.1
438,083 + 0.7
438,085 + 2.2
438,089 - 0.6
438,089 + 0.1
438,090 - -0.9
438,091 - -1.4
438,094 + 0.5
438,098 + 0.8
438,106 + 0.3
438,107 + 0.7
438,112 + 0.3
438,112 + 0.1
438,124 + 2.6
438,131 - 1.5
438,142 - -0.4
438,148 - -0.5
438,150 - -0.7
438,161 + 1.2
438,168 - 0.2
438,180 - 0.0
438,180 + 1.7
438,181 + 1.4
438,193 + 0.9
438,195 - 0.6
438,208 - 0.6
438,208 + -0.4
438,227 + 1.3
438,231 - -0.6
438,233 - 0.7
438,234 - -0.7
438,236 + 0.8
438,237 - -0.8
438,239 + -0.7
438,242 + 0.2
438,242 + 1.2
438,252 - 0.1
438,253 - 0.2
438,257 - -0.3
438,257 - 0.1
438,259 + 1.4
438,259 + 2.0
438,263 - 0.4
438,264 + 1.0
438,266 - -0.1
438,282 + 0.4
438,283 - -1.0
438,287 - 1.0
438,294 - 0.9
438,303 - -1.3
438,306 + 0.8
438,316 - -1.3
438,319 + -1.6
438,320 - 2.5
438,326 + 1.3
438,330 - -0.2
438,341 + 0.7
438,344 - 1.4
438,346 - 0.6
438,347 - -0.5
438,361 - 1.0
438,368 + 0.2
438,380 - -0.4
438,414 - -0.4
438,426 - -0.4
438,436 - -0.4
438,446 + -0.2
438,469 - 2.9
438,471 - 1.5
438,472 + -0.7
438,478 - -0.2
438,503 + 0.6
438,542 - -0.1
438,552 + 0.3
438,560 - -1.4
438,603 - -0.3
438,612 - 0.6
438,614 - 0.5
438,629 + -1.1
438,643 + -1.6
438,645 + 0.4
438,655 - 0.5
438,662 - 2.5
438,778 - 0.2
438,784 + 0.2
438,844 - 11520 mRNA_3152 0.17 -0.7
438,898 + 11520 mRNA_3152 0.32 -0.5
438,920 + 11520 mRNA_3152 0.38 -0.3
438,952 - 11520 mRNA_3152 0.46 1.3
439,046 - 11520 mRNA_3152 0.72 0.8
439,067 - 11520 mRNA_3152 0.77 1.2
439,080 + 11520 mRNA_3152 0.81 0.4
439,089 + 11520 mRNA_3152 0.83 0.1