Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3102

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321739 to 325524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325747 to 328243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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324,799 - 11469 mRNA_3101 0.81 0.5
324,964 - 11469 mRNA_3101 0.85 1.3
324,971 + 11469 mRNA_3101 0.85 -0.2
325,072 + 11469 mRNA_3101 0.88 -1.8
325,117 + 11469 mRNA_3101 0.89 0.6
325,139 + 11469 mRNA_3101 0.90 0.3
325,143 + 11469 mRNA_3101 0.90 0.2
325,252 - 0.3
325,291 + 1.5
325,413 - 0.0
325,413 - 0.2
325,421 - 0.1
325,435 + 0.9
325,445 - 0.5
325,534 - 0.3
325,557 + -0.1
325,558 - 0.2
325,559 - 1.1
325,561 - 0.9
325,562 - 1.3
325,568 - -3.8
325,568 - 0.8
325,572 + 0.1
325,575 - 0.4
325,577 - 1.2
325,579 - -1.3
325,581 - 1.1
325,595 - -0.5
325,595 - 0.2
325,595 - 1.2
325,596 + 0.7
325,601 + -0.3
325,603 - 0.0
325,722 + 1.1
325,735 - 0.3
325,750 - 0.8
325,762 - 1.2
325,763 - -0.0
325,763 - 2.3
325,763 - 2.1
325,763 - 0.2
325,763 - -1.9
325,763 - -0.2
325,764 - 0.2
325,768 + 0.2
325,768 - 1.2
325,769 - -0.0
325,770 + -0.4
325,771 + 0.9
325,772 + -1.2
325,772 - -0.3
325,775 + 0.4
325,777 + -1.3
325,786 - 0.1
325,795 + -0.1
325,804 - 1.5
325,823 + 1.9
325,871 + 0.6
325,874 - 0.4
325,891 + 0.2
325,894 - -0.0
325,902 + -0.9
325,903 - -1.3
325,904 + 0.1
325,906 - 0.9
325,909 + 2.2
325,918 - 0.3
325,918 - 1.8
325,921 - 2.6
325,922 + -0.0
325,922 + 0.1
325,923 - -0.8
325,924 + 0.7
325,928 + 0.3
325,929 + 0.1
325,930 - -1.1
325,932 - 2.5
325,935 - -0.9
325,936 + -0.4
325,944 + 1.6
325,946 - 1.0
325,950 + -1.4
325,952 + -0.1
325,953 - 0.3
325,957 - -0.2
326,077 - 11470 mRNA_3102 0.13 0.2
326,078 - 11470 mRNA_3102 0.13 1.6
326,084 + 11470 mRNA_3102 0.13 0.2
326,089 - 11470 mRNA_3102 0.14 1.2
326,090 - 11470 mRNA_3102 0.14 -0.3
326,091 - 11470 mRNA_3102 0.14 -1.7
326,095 - 11470 mRNA_3102 0.14 0.1
326,096 - 11470 mRNA_3102 0.14 0.6
326,101 + 11470 mRNA_3102 0.14 1.2
326,101 + 11470 mRNA_3102 0.14 0.3
326,117 + 11470 mRNA_3102 0.15 0.9
326,122 + 11470 mRNA_3102 0.15 0.1
326,221 + 11470 mRNA_3102 0.19 -0.0
326,223 - 11470 mRNA_3102 0.19 1.1
326,226 - 11470 mRNA_3102 0.19 -0.8
326,235 - 11470 mRNA_3102 0.20 1.0
326,249 + 11470 mRNA_3102 0.20 -1.7
326,251 - 11470 mRNA_3102 0.20 0.6
326,263 + 11470 mRNA_3102 0.21 0.0
326,270 + 11470 mRNA_3102 0.21 0.7
326,294 + 11470 mRNA_3102 0.22 0.3
326,306 + 11470 mRNA_3102 0.22 -0.7
326,405 + 11470 mRNA_3102 0.26 1.1
326,417 - 11470 mRNA_3102 0.27 -0.2
326,498 + 11470 mRNA_3102 0.30 0.3
326,513 + 11470 mRNA_3102 0.31 -0.5
326,554 - 11470 mRNA_3102 0.32 -0.5
326,562 + 11470 mRNA_3102 0.33 0.9
326,585 + 11470 mRNA_3102 0.34 0.6
326,810 - 11470 mRNA_3102 0.43 0.2
326,832 + 11470 mRNA_3102 0.43 -0.1
326,835 + 11470 mRNA_3102 0.44 -1.8
326,851 + 11470 mRNA_3102 0.44 0.3
326,855 - 11470 mRNA_3102 0.44 -0.9
326,903 - 11470 mRNA_3102 0.46 0.8
326,988 - 11470 mRNA_3102 0.50 -0.2
326,994 + 11470 mRNA_3102 0.50 -0.1
327,138 - 11470 mRNA_3102 0.56 0.8
327,164 + 11470 mRNA_3102 0.57 1.1
327,165 - 11470 mRNA_3102 0.57 1.0
327,273 - 11470 mRNA_3102 0.61 -0.4
327,434 - 11470 mRNA_3102 0.68 0.5
327,602 + 11470 mRNA_3102 0.74 -0.5
327,713 - 11470 mRNA_3102 0.79 1.3
327,728 - 11470 mRNA_3102 0.79 -0.3
327,759 - 11470 mRNA_3102 0.81 0.1
327,831 + 11470 mRNA_3102 0.83 0.9
327,869 - 11470 mRNA_3102 0.85 0.1
327,876 - 11470 mRNA_3102 0.85 1.1
328,304 - 0.0
328,318 - -1.2
328,320 - 2.1
328,341 + 0.5
328,457 + 0.4
328,496 + 2.0
328,548 - 0.9
328,864 + 0.7
328,932 + 1.2
328,998 - 1.5
329,099 - 11471 mRNA_3103 0.11 0.1
329,100 + 11471 mRNA_3103 0.11 0.2
329,100 + 11471 mRNA_3103 0.11 -0.2