Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2962

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654993 to 657914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658359 to 659860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660416 to 662957 11331

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
657,402 - 11329 mRNA_2961 0.82 0.3
657,470 - 11329 mRNA_2961 0.85 -1.2
657,599 + 11329 mRNA_2961 0.89 0.3
657,740 - -1.0
657,876 + -0.7
657,889 + 0.9
657,890 + 0.4
658,044 + -1.2
658,120 + -0.4
658,129 - -1.5
658,174 - 1.4
658,175 + 1.5
658,193 - 1.1
658,294 + 0.9
658,297 - -0.1
658,344 - 0.6
658,506 - -1.3
658,513 - 11330 mRNA_2962 0.10 -0.9
658,587 - 11330 mRNA_2962 0.15 0.6
658,595 + 11330 mRNA_2962 0.16 -0.4
658,645 + 11330 mRNA_2962 0.19 0.1
658,791 - 11330 mRNA_2962 0.29 -0.2
658,886 + 11330 mRNA_2962 0.35 -0.4
658,940 - 11330 mRNA_2962 0.39 -0.2
659,072 - 11330 mRNA_2962 0.47 -0.9
659,084 - 11330 mRNA_2962 0.48 0.0
659,206 - 11330 mRNA_2962 0.56 -1.5
659,958 + -0.7
660,064 + 0.8
660,068 - -1.6
660,102 - -0.9
660,210 - 1.4