Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2672

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726293 to 729723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730581 to 733538 11040 mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734339 to 738341 11041

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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729,665 + 0.9
729,703 + 0.4
729,785 - 0.4
729,799 + -0.9
729,956 - 0.3
729,959 - -0.9
729,968 - -1.2
729,969 + 2.4
729,970 + -1.2
729,999 - 2.9
730,001 - 0.6
730,013 + -0.5
730,013 + 2.1
730,087 - 2.2
730,112 - 0.9
730,119 + -1.3
730,122 - 2.5
730,144 - 0.3
730,146 - 0.3
730,146 - -3.0
730,147 + 0.8
730,152 - -0.6
730,152 + -0.3
730,167 + -1.9
730,172 - 0.0
730,185 + -0.3
730,213 + 1.1
730,213 + 0.8
730,287 + 0.7
730,300 + -0.5
730,309 + 1.3
730,323 + 0.6
730,330 - 1.1
730,340 + 1.5
730,470 - -0.1
730,472 - 0.5
730,473 - 0.3
730,476 - 0.4
730,484 - -1.2
730,497 + 2.4
730,504 + -4.1
730,505 + 1.5
730,507 - 1.3
730,618 - -0.8
730,786 - 0.8
731,465 - 11040 mRNA_2672 0.30 -0.2
731,639 + 11040 mRNA_2672 0.36 -1.1
731,642 - 11040 mRNA_2672 0.36 -3.6
732,207 + 11040 mRNA_2672 0.55 -2.6
732,262 - 11040 mRNA_2672 0.57 -0.4
732,392 + 11040 mRNA_2672 0.61 -0.5
732,614 + 11040 mRNA_2672 0.69 -1.9
732,964 + 11040 mRNA_2672 0.81 -1.4
733,097 - 11040 mRNA_2672 0.85 -3.3
733,154 + 11040 mRNA_2672 0.87 -2.0
733,396 - 1.9
733,546 + -0.4
733,549 + 0.3
733,683 - 0.6
733,703 - 2.5
733,705 + 0.5
733,723 + 0.4
733,728 - 0.4
733,838 - 0.2
733,841 - 0.7
733,870 - -1.1
734,150 + 0.6