Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2583

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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494,201 + 10949 mRNA_2581 0.85 0.2
494,232 + 10949 mRNA_2581 0.87 0.1
494,321 - 0.3
494,326 - -0.5
494,479 - -0.8
494,633 + 10950 mRNA_2582 0.26 0.8
494,638 - 10950 mRNA_2582 0.27 0.8
494,651 - 10950 mRNA_2582 0.29 1.2
494,654 + 10950 mRNA_2582 0.29 2.8
494,675 - 10950 mRNA_2582 0.33 0.0
494,680 + 10950 mRNA_2582 0.33 1.6
494,765 - 10950 mRNA_2582 0.47 0.6
494,769 - 10950 mRNA_2582 0.48 0.1
494,887 - 10950 mRNA_2582 0.66 0.4
494,926 + 10950 mRNA_2582 0.73 1.3
494,937 + 10950 mRNA_2582 0.74 0.1
494,952 - 10950 mRNA_2582 0.77 0.5
495,085 + 2.1
495,119 - 0.4
495,263 + -0.7
495,401 + 0.7
495,972 - 10951 mRNA_2583 0.18 -0.8
496,188 + 10951 mRNA_2583 0.23 -1.7
496,345 - 10951 mRNA_2583 0.27 -1.5
496,363 - 10951 mRNA_2583 0.28 1.1
496,372 - 10951 mRNA_2583 0.28 -0.0
496,401 + 10951 mRNA_2583 0.29 0.4
496,778 + 10951 mRNA_2583 0.38 0.1
496,901 + 10951 mRNA_2583 0.40 1.0
496,925 + 10951 mRNA_2583 0.41 1.4
496,951 + 10951 mRNA_2583 0.42 -0.0
497,102 + 10951 mRNA_2583 0.45 1.3
497,136 + 10951 mRNA_2583 0.46 0.1
497,613 - 10951 mRNA_2583 0.57 -0.6
497,676 - 10951 mRNA_2583 0.59 1.2
497,843 - 10951 mRNA_2583 0.63 -0.1
497,878 + 10951 mRNA_2583 0.64 -0.4
497,994 - 10951 mRNA_2583 0.66 -0.0
498,017 + 10951 mRNA_2583 0.67 0.9
498,536 - 10951 mRNA_2583 0.79 2.0
498,861 - 10951 mRNA_2583 0.87 -0.9
498,918 + 10951 mRNA_2583 0.88 0.6
499,013 + 0.2
499,320 + -0.2
499,323 - 1.1
499,471 + 0.4
499,479 - -0.8
499,635 - 1.2
499,639 + 0.1
499,751 - -1.2
499,757 - 1.4
499,760 - 0.6
499,773 - 0.9
499,778 + 1.0
499,778 + 0.7
499,885 - 0.5
499,942 - 10952 mRNA_2584 0.10 1.6
500,074 + 10952 mRNA_2584 0.15 -0.0
500,203 - 10952 mRNA_2584 0.19 0.7
500,212 - 10952 mRNA_2584 0.20 0.7
500,227 + 10952 mRNA_2584 0.20 1.0
500,252 + 10952 mRNA_2584 0.21 1.3
500,322 + 10952 mRNA_2584 0.23 1.4
500,329 - 10952 mRNA_2584 0.24 0.2
500,384 + 10952 mRNA_2584 0.25 1.0
500,397 - 10952 mRNA_2584 0.26 1.1
500,402 - 10952 mRNA_2584 0.26 -0.2