Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2210

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577 mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578 mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367556 to 370614 10579

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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362,579 - 10577 mRNA_2209 0.89 0.9
362,588 + 10577 mRNA_2209 0.89 0.8
362,678 - 1.4
362,708 - -0.7
362,708 + 0.3
362,835 + 0.6
362,835 + 0.1
362,861 - 1.9
362,864 + 0.5
362,868 + -0.2
362,959 - 1.3
362,965 + 0.4
362,985 - -0.1
362,986 + -0.1
362,991 - 1.3
362,993 - 2.6
362,995 - 0.6
363,022 - 1.9
363,022 - 2.0
363,023 - 0.1
363,024 + 0.5
363,024 + 1.1
363,063 - 1.7
363,065 + 0.6
363,101 - 0.2
363,152 - 0.6
363,166 - -1.0
363,179 - 0.9
363,186 - 1.0
363,223 - 1.3
363,276 - 1.3
363,466 + 0.7
363,626 - -0.6
363,667 + 0.9
363,934 + 10578 mRNA_2210 0.16 -0.5
364,151 - 10578 mRNA_2210 0.22 0.5
364,823 + 10578 mRNA_2210 0.39 1.7
364,834 + 10578 mRNA_2210 0.39 1.3
365,132 - 10578 mRNA_2210 0.47 0.2
365,165 - 10578 mRNA_2210 0.48 1.2
365,561 + 10578 mRNA_2210 0.58 0.2
365,581 - 10578 mRNA_2210 0.58 0.2
366,140 + 10578 mRNA_2210 0.73 2.1
366,283 - 10578 mRNA_2210 0.76 1.2
366,324 + 10578 mRNA_2210 0.77 -0.3
366,404 - 10578 mRNA_2210 0.79 -1.0
366,870 + 0.3
366,988 - 0.8
367,265 + 1.4
367,297 - 1.5
367,339 + 0.5
367,360 + 0.8
367,447 - 0.6
367,477 + -1.0
367,477 + -0.4
367,477 + -1.5