Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2204

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343203 to 347570 10571 mRNA_2204: 10572 - K03786 aroQ, qutE 3-dehydroquinate dehydratase II, at 347838 to 348942 10572 mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349439 to 350135 10573

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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347,602 - 0.1
347,606 - 0.5
347,619 + 0.2
347,619 - -0.3
347,624 + -0.3
347,624 - -0.6
347,630 - 0.2
347,685 - 2.1
347,701 - 0.6
347,705 + 0.3
347,743 - 1.3
347,744 + 0.1
347,754 - -1.5
347,759 + 1.4
347,759 + -0.1
347,761 - -0.3
347,779 - -1.1
347,800 + -0.4
347,879 - 0.3
347,892 - 3.4
347,895 + -0.2
348,042 + 10572 mRNA_2204 0.18 -0.4
348,166 + 10572 mRNA_2204 0.30 0.1
348,193 - 10572 mRNA_2204 0.32 0.8
348,195 - 10572 mRNA_2204 0.32 1.2
349,458 - 0.8
349,479 - 0.2
349,489 - 0.2
349,639 - 10573 mRNA_2205 0.29 2.0
349,759 - 10573 mRNA_2205 0.46 0.6