Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2194

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310220 to 312834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313322 to 318107 10562

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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312,469 - 10561 mRNA_2193 0.86 1.1
312,482 + 10561 mRNA_2193 0.87 0.8
312,584 - -0.3
312,626 + 0.5
312,631 + 0.2
312,724 - 0.4
312,759 - 0.2
312,787 - -0.0
312,918 + -0.1
312,919 - -1.1
312,919 - 0.1
312,925 + 0.4
312,925 - -1.7
312,933 + 0.2
312,933 + 0.3
312,935 - 1.3
312,936 + -0.3
312,938 - 1.2
312,938 - -0.7
312,940 + 0.5
312,945 + -1.2
312,945 + 1.5
312,945 + 0.9
312,947 + -0.2
312,951 + -0.1
312,955 - 0.4
312,960 - 0.2
312,961 + 0.3
312,961 + 0.3
312,965 + 0.4
312,969 - -1.7
312,971 + -0.0
312,975 - 1.9
312,987 - -0.0
312,988 - 1.3
312,988 + 1.8
312,989 + 2.2
312,996 + -1.3
312,997 - 0.7
313,019 + -0.8
313,099 - -1.1
313,112 + -0.1
313,113 + 1.0
313,122 + 0.1
313,133 + 1.1
313,199 - 0.4
313,201 - -0.7
313,203 + 0.4
313,206 - 0.8
313,349 - -0.0
313,508 - 1.1
313,515 + 0.3
313,516 - -0.3
313,697 + 1.9
314,385 - 10562 mRNA_2194 0.22 0.5
314,811 - 10562 mRNA_2194 0.31 0.9
314,849 - 10562 mRNA_2194 0.32 -0.1
314,942 - 10562 mRNA_2194 0.34 -1.0
315,106 - 10562 mRNA_2194 0.37 -0.2
315,107 + 10562 mRNA_2194 0.37 2.1
315,116 + 10562 mRNA_2194 0.37 0.3
315,212 - 10562 mRNA_2194 0.39 -1.2
315,248 + 10562 mRNA_2194 0.40 1.3
315,502 - 10562 mRNA_2194 0.46 1.3
315,511 - 10562 mRNA_2194 0.46 -0.1
315,512 - 10562 mRNA_2194 0.46 0.2
315,569 - 10562 mRNA_2194 0.47 -0.1
316,122 + 10562 mRNA_2194 0.59 2.5
316,134 + 10562 mRNA_2194 0.59 0.5
316,220 - 10562 mRNA_2194 0.61 0.2
316,533 + 10562 mRNA_2194 0.67 3.4
316,861 - 10562 mRNA_2194 0.74 0.8
317,145 - 10562 mRNA_2194 0.80 0.5
317,313 - 10562 mRNA_2194 0.83 -0.7
317,318 - 10562 mRNA_2194 0.83 -1.3
317,582 - 10562 mRNA_2194 0.89 1.0
317,854 - 0.1
317,892 - 0.7
317,893 + -0.4
318,046 - 1.7
318,169 + -1.8
318,170 + -1.0
318,202 + -0.0
318,205 + 0.8
318,217 + 0.3
318,250 - -1.6
318,339 + -0.7
318,387 - 0.5
318,387 + -1.2
318,390 + 1.7
318,391 - -0.9
318,446 - 1.6
318,739 - -0.1
318,774 + 1.8
318,978 + 1.2
319,016 + 0.2
319,059 + 1.4
319,069 + 0.1