Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2134

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146345 to 148532 10501 mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148859 to 150709 10502 mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150841 to 152742 10503

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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148,118 - 10501 mRNA_2133 0.81 0.2
148,407 + 1.2
148,501 + -0.9
148,724 - -0.1
149,400 + 10502 mRNA_2134 0.29 0.5
149,911 + 10502 mRNA_2134 0.57 1.2
149,913 - 10502 mRNA_2134 0.57 1.8
150,277 - 10502 mRNA_2134 0.77 0.3
150,622 + 2.3
150,623 + 1.5
150,712 + -0.6
150,725 + 0.2
150,752 + -0.2
150,774 + 0.3
150,861 - 0.5
150,896 - 0.1
150,941 + 1.0
151,043 - 10503 mRNA_2135 0.11 0.9
151,062 - 10503 mRNA_2135 0.12 -0.2
151,089 + 10503 mRNA_2135 0.13 1.1
151,197 + 10503 mRNA_2135 0.19 0.2
151,216 + 10503 mRNA_2135 0.20 0.3
151,245 - 10503 mRNA_2135 0.21 1.6
151,478 - 10503 mRNA_2135 0.33 1.1