Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2077

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14987 to 18739 10444 mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20466 to 22211 10446

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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18,192 - 10444 mRNA_2076 0.85 -0.5
18,548 + -0.5
18,639 + -0.2
18,742 - 0.2
18,860 + 1.0
18,863 - 1.2
18,878 - 0.9
19,094 + 1.1
19,127 - -1.1
19,187 - 0.2
19,313 - 10445 mRNA_2077 0.19 0.6
19,326 - 10445 mRNA_2077 0.20 -0.7
19,482 - 10445 mRNA_2077 0.34 1.0
19,649 - 10445 mRNA_2077 0.49 1.4
19,663 + 10445 mRNA_2077 0.50 -0.1
19,676 - 10445 mRNA_2077 0.51 1.5
19,761 + 10445 mRNA_2077 0.59 -0.2
19,762 + 10445 mRNA_2077 0.59 1.0
19,949 - 10445 mRNA_2077 0.75 1.2
20,094 - 10445 mRNA_2077 0.88 1.0
20,094 - 10445 mRNA_2077 0.88 0.3
20,100 + 10445 mRNA_2077 0.89 -1.1
20,100 + 10445 mRNA_2077 0.89 1.8
20,306 + -0.2
20,419 + 0.6
20,794 - 10446 mRNA_2078 0.19 1.4
20,866 - 10446 mRNA_2078 0.23 0.3
21,016 - 10446 mRNA_2078 0.32 -0.1
21,051 + 10446 mRNA_2078 0.34 -0.4
21,120 - 10446 mRNA_2078 0.37 -0.3
21,148 - 10446 mRNA_2078 0.39 1.2