Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2025

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393 mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776938 to 779956 10394

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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772,947 - 10392 mRNA_2024 0.83 1.3
773,452 - 0.1
773,518 + -1.0
773,670 - -0.4
773,672 + 0.5
773,808 - -0.1
773,832 - 1.7
773,836 - 1.8
773,843 - 1.3
773,843 + 0.3
773,850 + 0.5
773,864 - 1.9
773,981 - 1.4
773,997 + 1.4
774,001 + 0.6
774,117 - 1.3
774,121 - 0.9
774,147 + -0.2
774,263 + 10393 mRNA_2025 0.13 -0.2
774,306 + 10393 mRNA_2025 0.15 0.6
774,388 - 10393 mRNA_2025 0.18 -1.9
774,416 - 10393 mRNA_2025 0.19 -0.4
774,440 - 10393 mRNA_2025 0.20 -0.2
774,441 + 10393 mRNA_2025 0.20 1.0
774,441 + 10393 mRNA_2025 0.20 1.0
774,553 - 10393 mRNA_2025 0.24 0.0
774,725 + 10393 mRNA_2025 0.30 -0.2
774,744 + 10393 mRNA_2025 0.31 -0.2
774,749 + 10393 mRNA_2025 0.31 0.1
774,862 - 10393 mRNA_2025 0.35 -0.0
775,021 + 10393 mRNA_2025 0.41 -0.4
775,078 - 10393 mRNA_2025 0.43 -0.2
775,184 - 10393 mRNA_2025 0.47 -0.1
775,197 + 10393 mRNA_2025 0.48 0.7
775,345 - 10393 mRNA_2025 0.53 -0.6
775,434 + 10393 mRNA_2025 0.56 0.3
775,709 - 10393 mRNA_2025 0.66 0.4
776,520 + -1.0
776,608 + 0.0
776,790 - 0.6
776,802 + -0.6
776,806 + 0.5
776,817 - 3.3
776,818 - 1.2
777,072 - -0.1
777,083 + 0.1
777,293 - 10394 mRNA_2026 0.12 1.6