Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2020

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2019: 10387 - K07088 K07088 uncharacterized protein, at 760625 to 762571 10387 mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388 mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765421 to 766356 10389

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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762,049 + 10387 mRNA_2019 0.73 -0.5
762,168 + 10387 mRNA_2019 0.79 0.0
762,183 - 10387 mRNA_2019 0.80 -0.1
762,185 + 10387 mRNA_2019 0.80 1.2
762,552 - 0.3
762,590 + -0.0
762,814 + 0.5
762,874 + 1.7
762,942 - 2.3
762,985 + 10388 mRNA_2020 0.12 -0.5
763,128 - 10388 mRNA_2020 0.18 0.8
763,475 - 10388 mRNA_2020 0.33 0.8
763,607 - 10388 mRNA_2020 0.39 0.5
763,736 - 10388 mRNA_2020 0.44 1.4
763,743 + 10388 mRNA_2020 0.44 1.4
763,766 + 10388 mRNA_2020 0.45 -0.1
764,195 + 10388 mRNA_2020 0.64 0.3
764,689 - 10388 mRNA_2020 0.86 0.7
764,737 + 10388 mRNA_2020 0.88 1.6
764,919 + 0.6
764,921 + 0.4
764,924 - 0.5
764,931 - 1.7
764,945 + -1.7
764,964 + 0.4
765,085 - 0.8
765,092 + 0.6
765,096 - -0.5
765,400 + 1.5
765,403 + 0.8
765,509 - 0.2
765,699 - 10389 mRNA_2021 0.30 1.1