Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1734

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1733: 10101 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 65153 to 66958 10101 mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67947 to 72087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73051 to 76843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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67,020 - -2.9
67,043 - 2.1
67,152 - -0.8
67,162 - -1.0
67,213 - 0.5
67,320 + -0.1
67,320 - 0.1
67,321 - -0.3
67,399 - 0.9
67,464 - 0.9
67,470 + -0.1
67,477 - -0.4
67,543 - -0.1
67,543 - 0.3
67,594 - 0.7
67,638 + -0.1
67,670 - 0.4
67,671 - -0.1
67,709 - 0.4
67,848 + 2.1
67,858 + 1.5
67,900 - -0.1
68,029 + -0.5
68,460 - 10102 mRNA_1734 0.12 -0.3
68,591 - 10102 mRNA_1734 0.16 0.5
69,006 + 10102 mRNA_1734 0.26 -0.4
69,169 + 10102 mRNA_1734 0.30 -0.1
69,443 - 10102 mRNA_1734 0.36 -0.1
69,464 + 10102 mRNA_1734 0.37 1.5
69,742 - 10102 mRNA_1734 0.43 1.2
69,867 + 10102 mRNA_1734 0.46 1.0
69,875 - 10102 mRNA_1734 0.47 0.4
69,885 + 10102 mRNA_1734 0.47 1.0
70,023 - 10102 mRNA_1734 0.50 0.1
70,040 + 10102 mRNA_1734 0.51 0.2
70,042 - 10102 mRNA_1734 0.51 -0.1
70,042 - 10102 mRNA_1734 0.51 1.0
70,047 - 10102 mRNA_1734 0.51 0.7
70,049 + 10102 mRNA_1734 0.51 2.7
70,051 + 10102 mRNA_1734 0.51 1.3
70,052 - 10102 mRNA_1734 0.51 0.4
70,056 - 10102 mRNA_1734 0.51 -0.6
70,056 - 10102 mRNA_1734 0.51 -0.4
70,093 - 10102 mRNA_1734 0.52 0.2
70,232 + 10102 mRNA_1734 0.55 0.1
70,349 + 10102 mRNA_1734 0.58 -0.6
70,364 - 10102 mRNA_1734 0.58 1.4
70,370 - 10102 mRNA_1734 0.59 2.3
70,371 + 10102 mRNA_1734 0.59 0.0
70,382 - 10102 mRNA_1734 0.59 1.0
70,382 - 10102 mRNA_1734 0.59 1.6
70,382 + 10102 mRNA_1734 0.59 0.2
70,389 + 10102 mRNA_1734 0.59 0.5
70,556 + 10102 mRNA_1734 0.63 2.2
70,557 - 10102 mRNA_1734 0.63 -2.8
70,562 - 10102 mRNA_1734 0.63 -0.2
70,577 - 10102 mRNA_1734 0.64 -0.1
70,582 + 10102 mRNA_1734 0.64 1.1
70,614 - 10102 mRNA_1734 0.64 0.5
70,634 + 10102 mRNA_1734 0.65 -1.2
70,646 + 10102 mRNA_1734 0.65 0.4
70,663 + 10102 mRNA_1734 0.66 0.1
70,672 - 10102 mRNA_1734 0.66 1.7
70,673 - 10102 mRNA_1734 0.66 0.6
70,677 - 10102 mRNA_1734 0.66 -0.3
70,677 - 10102 mRNA_1734 0.66 0.9
70,680 - 10102 mRNA_1734 0.66 1.4
70,690 + 10102 mRNA_1734 0.66 1.7
70,750 + 10102 mRNA_1734 0.68 1.1
70,767 - 10102 mRNA_1734 0.68 2.2
70,820 - 10102 mRNA_1734 0.69 -0.3
70,979 + 10102 mRNA_1734 0.73 1.4
72,165 + -1.8
72,196 - 0.4
72,213 + 0.1
72,285 - 1.5
72,774 + 0.4
72,827 + -1.2
72,899 - 3.3