Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1721

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34875 to 37390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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31,450 - 10088 mRNA_1720 0.79 0.4
31,473 + 10088 mRNA_1720 0.79 -1.6
31,607 + 10088 mRNA_1720 0.84 2.1
31,620 - 10088 mRNA_1720 0.85 -1.0
31,762 + 10088 mRNA_1720 0.90 0.7
31,878 - 0.8
32,031 - 2.2
32,173 + 0.7
32,190 - 0.2
32,333 + -1.2
32,336 - -0.6
32,337 - -1.9
32,350 + -0.7
32,350 - 1.1
32,354 + 2.5
32,355 - 1.7
32,356 + -0.6
32,357 + -0.4
32,362 + -0.9
32,547 - -0.1
32,588 + -0.4
32,822 - 10089 mRNA_1721 0.21 0.3
32,823 - 10089 mRNA_1721 0.21 0.0
32,873 - 10089 mRNA_1721 0.23 0.2
33,180 - 10089 mRNA_1721 0.39 -0.2
33,187 + 10089 mRNA_1721 0.40 1.2
33,822 - 10089 mRNA_1721 0.73 0.7
33,824 - 10089 mRNA_1721 0.73 -0.6
34,606 + 0.0
34,704 + 0.5
34,710 + 1.3
34,717 + 0.1
34,753 - 1.2
34,868 + 0.7
34,948 - -1.0
35,013 - 2.2
35,040 + 1.0
35,159 - 10090 mRNA_1722 0.11 0.0
35,168 + 10090 mRNA_1722 0.12 -0.4