Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1708

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,923 + 1.7
3,038 - 0.4
3,062 + -0.8
3,198 - 0.4
3,200 + -0.1
3,208 + 0.7
3,333 + 0.1
3,347 - -1.0
3,348 - 0.2
3,381 + -0.5
3,459 + -0.1
3,634 - 1.6
3,791 + 0.1
3,839 - 0.5
3,866 + 0.1
3,931 - 10076 mRNA_1708 0.12 -0.3
4,055 + 10076 mRNA_1708 0.32 -0.7
4,063 - 10076 mRNA_1708 0.33 1.2
4,072 - 10076 mRNA_1708 0.35 0.9
4,093 - 10076 mRNA_1708 0.38 1.3
4,363 - 10076 mRNA_1708 0.82 1.6
4,363 - 10076 mRNA_1708 0.82 -0.5
4,421 - -0.2
4,425 - -1.8
4,425 + 0.6
4,432 + 0.9
4,432 + 1.0
4,482 - 0.2
4,533 - 1.2
4,540 + -0.2
4,567 - 0.3
4,597 + 1.0
4,702 + -0.2
4,933 - 0.3
4,939 - 1.3
5,001 - 0.8
5,089 - 2.1
5,089 - -0.4
5,092 + 1.2
5,117 + 0.3
5,290 + 10077 mRNA_1709 0.11 0.8
5,296 + 10077 mRNA_1709 0.11 -1.1
5,365 + 10077 mRNA_1709 0.14 -0.2
5,371 + 10077 mRNA_1709 0.14 0.6
5,372 + 10077 mRNA_1709 0.14 0.2
5,424 + 10077 mRNA_1709 0.16 1.1