Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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26 + -0.3
27 + 1.6
28 + -0.3
31 + 1.0
31 + 0.4
41 + -0.6
66 + 0.7
72 - 0.4
72 - 0.7
93 + 1.1
104 + 1.3
105 + 0.7
108 + -0.7
120 - -1.3
128 + 0.8
135 - -1.5
136 + -0.0
136 - -0.6
137 - 0.5
137 - -1.3
138 + 0.3
139 + 0.5
141 - -0.5
150 - -0.4
151 - 0.1
155 + -1.0
155 + 1.5
156 + 0.8
158 + -0.7
173 - -0.3
175 + 1.5
180 - -0.2
215 + 0.0
220 - 1.7
234 + 0.7
254 - 0.6
283 + 0.5
304 + 0.1
322 + 0.1
324 + 0.7
427 + 0.9
453 + 10074 mRNA_1706 0.13 0.2
465 - 10074 mRNA_1706 0.14 0.6
482 + 10074 mRNA_1706 0.16 1.0
493 - 10074 mRNA_1706 0.18 1.3
647 + 10074 mRNA_1706 0.36 1.3
683 - 10074 mRNA_1706 0.40 0.2
809 + 10074 mRNA_1706 0.55 1.8
842 - 10074 mRNA_1706 0.59 0.4
844 + 10074 mRNA_1706 0.59 -0.2
848 - 10074 mRNA_1706 0.59 0.4
902 + 10074 mRNA_1706 0.66 1.0
949 - 10074 mRNA_1706 0.71 -0.5
949 - 10074 mRNA_1706 0.71 0.8
950 + 10074 mRNA_1706 0.71 0.6
974 - 10074 mRNA_1706 0.74 0.5
1,016 + 10074 mRNA_1706 0.79 -0.4
1,065 + 10074 mRNA_1706 0.85 0.9
1,118 + 0.5
1,142 + 0.2
1,155 + 0.3
1,272 - 0.9
1,281 + 2.5
1,573 + 10075 mRNA_1707 0.23 0.7
1,625 + 10075 mRNA_1707 0.27 0.8
1,625 + 10075 mRNA_1707 0.27 0.7
1,628 + 10075 mRNA_1707 0.27 -0.0
1,646 + 10075 mRNA_1707 0.28 1.1
1,649 - 10075 mRNA_1707 0.28 1.7
1,680 + 10075 mRNA_1707 0.30 0.9
1,781 + 10075 mRNA_1707 0.36 0.5
1,926 + 10075 mRNA_1707 0.45 2.2
1,996 + 10075 mRNA_1707 0.49 1.0
2,005 - 10075 mRNA_1707 0.50 0.5
2,010 - 10075 mRNA_1707 0.50 0.2
2,033 + 10075 mRNA_1707 0.51 0.7
2,068 + 10075 mRNA_1707 0.53 0.6
2,076 + 10075 mRNA_1707 0.54 -2.0