Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11969 to 15219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15782 to 19108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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15,354 - 0.6
15,355 - 2.1
15,359 + 1.7
15,512 - 0.3
15,519 + 0.9
15,580 + 1.0
15,637 + -0.6
15,648 + 0.5
15,654 - -1.0
15,656 - 0.4
15,657 + -1.1
15,663 - 1.2
15,665 - 1.0
15,665 + 0.2
15,667 + -0.3
15,671 + -1.0
15,683 + -0.2
15,684 + -0.2
15,699 + 1.1
15,713 + -0.5
15,792 - 0.2
15,857 + 0.6
15,996 - 1.3
16,078 + 1.1
16,087 - 0.9
16,089 + -0.1
16,122 + 9700 mRNA_1332 0.10 0.7
16,280 - 9700 mRNA_1332 0.15 -1.0
16,363 - 9700 mRNA_1332 0.17 0.8
16,505 - 9700 mRNA_1332 0.22 -1.4
16,505 - 9700 mRNA_1332 0.22 -0.8
16,546 + 9700 mRNA_1332 0.23 0.4
16,581 + 9700 mRNA_1332 0.24 1.7
16,581 + 9700 mRNA_1332 0.24 1.0
16,899 + 9700 mRNA_1332 0.34 1.0
16,980 - 9700 mRNA_1332 0.36 -0.7
17,024 - 9700 mRNA_1332 0.37 1.8
17,288 - 9700 mRNA_1332 0.45 -0.4
17,370 - 9700 mRNA_1332 0.48 -0.4
17,548 + 9700 mRNA_1332 0.53 0.2
17,574 - 9700 mRNA_1332 0.54 1.1
17,841 - 9700 mRNA_1332 0.62 -0.3
17,865 + 9700 mRNA_1332 0.63 0.5
17,957 + 9700 mRNA_1332 0.65 0.6
18,002 + 9700 mRNA_1332 0.67 -0.6
18,511 - 9700 mRNA_1332 0.82 -0.9
18,550 - 9700 mRNA_1332 0.83 -1.3
18,573 + 9700 mRNA_1332 0.84 -1.0
18,882 - 0.3
19,111 - 0.2
19,235 - 1.0
19,262 - -0.3
19,291 + -0.4
19,296 - -0.6
19,304 - 0.4
19,406 - -0.0
19,412 - 1.7
19,414 - 2.4
19,420 - -1.9
19,422 + -0.9
19,434 - -1.0
19,442 + 0.3
19,452 + 0.2
19,456 - -0.9
19,461 - -0.3
19,480 - 1.7
19,494 + 1.5
19,495 - -1.6
19,496 + 0.8
19,596 - 2.3
19,625 + 0.4
19,626 + 0.9
19,708 - -0.5
19,769 - 0.4
19,769 - 0.7
19,856 + -0.8
19,859 + 0.1
19,899 - 0.3