Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1280

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825311 to 827101 9648 mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827341 to 829667 9649

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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824,386 - 4.0
824,792 - -1.6
824,796 + 0.2
824,800 + 2.5
824,821 + 2.2
824,821 + -0.8
824,866 + -0.4
824,874 - -1.1
824,874 + 1.9
824,894 + -1.3
825,013 + 0.6
825,046 - 0.5
825,053 + 0.3
825,054 - 0.4
825,095 - 0.5
825,116 - -0.6
825,141 + 2.2
825,141 + -0.5
825,178 - -0.9
825,184 - 0.3
825,190 + -0.3
825,191 - -1.4
825,193 - 0.2
825,198 + -1.6
825,200 - -0.7
825,206 + 0.1
825,211 + 0.5
825,211 + 1.4
825,224 - -0.5
825,241 - -1.0
825,243 + 0.9
825,244 - 0.1
825,245 - 0.2
825,359 - -0.1
825,376 - 0.6
825,819 - 9648 mRNA_1280 0.28 0.3
825,826 + 9648 mRNA_1280 0.29 -1.1
826,980 + -0.1
826,982 + -0.1
826,986 + 0.0
827,048 + 0.8
827,056 + -0.4
827,147 - 0.6
827,293 - 0.9
827,305 + 1.8
827,345 + 0.2
827,413 + 1.2
827,425 + 0.1
827,444 + 0.4
827,495 - -0.4
827,512 - 0.7
827,593 - 9649 mRNA_1281 0.11 -0.1
827,594 + 9649 mRNA_1281 0.11 -0.3
827,653 + 9649 mRNA_1281 0.13 0.7
827,858 + 9649 mRNA_1281 0.22 0.3
827,878 - 9649 mRNA_1281 0.23 -2.6
827,983 - 9649 mRNA_1281 0.28 0.4