Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_923

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_922: 9290 - K06110 EXOC3, SEC6 exocyst complex component 3, at 2198886 to 2201562 9290 mRNA_923: 9291 - K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein, at 2202019 to 2204450 9291 mRNA_924: 9292 - KOG0798 Uncharacterized conserved protein, at 2204768 to 2206248 9292

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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2,201,324 + 0.1
2,201,464 + 1.6
2,201,471 + 1.0
2,201,475 + 1.5
2,201,529 + 0.1
2,201,581 + 1.1
2,201,593 - -0.1
2,201,703 - -2.2
2,201,704 + 0.0
2,201,708 + 0.6
2,201,712 - -0.2
2,201,722 - 0.4
2,201,782 - 0.1
2,201,798 + 1.4
2,201,867 - 1.7
2,201,884 + 0.5
2,201,907 - 0.5
2,201,907 - 2.6
2,201,914 + -0.3
2,201,924 - -1.1
2,201,927 + 0.3
2,201,933 + 1.3
2,201,934 + 0.3
2,202,006 - -0.7
2,202,015 + 1.4
2,202,026 - -1.3
2,202,038 + 0.2
2,202,053 + 0.6
2,202,065 - 1.0
2,202,187 - 0.2
2,202,199 - -0.2
2,202,202 - -0.8
2,202,302 + 9291 mRNA_923 0.12 1.7
2,202,305 + 9291 mRNA_923 0.12 1.1
2,202,333 - 9291 mRNA_923 0.13 -0.4
2,202,336 - 9291 mRNA_923 0.13 0.3
2,202,357 + 9291 mRNA_923 0.14 0.1
2,202,365 - 9291 mRNA_923 0.14 -0.0
2,202,476 - 9291 mRNA_923 0.19 -2.1
2,202,602 + 9291 mRNA_923 0.24 -0.2
2,202,605 - 9291 mRNA_923 0.24 0.2
2,202,623 + 9291 mRNA_923 0.25 -0.5
2,202,643 + 9291 mRNA_923 0.26 -0.1
2,202,749 - 9291 mRNA_923 0.30 3.0
2,202,755 + 9291 mRNA_923 0.30 0.8
2,202,942 + 9291 mRNA_923 0.38 1.2
2,202,956 + 9291 mRNA_923 0.39 -1.1
2,202,986 + 9291 mRNA_923 0.40 -0.7
2,203,053 - 9291 mRNA_923 0.43 0.5
2,203,053 - 9291 mRNA_923 0.43 0.1
2,203,079 - 9291 mRNA_923 0.44 1.8
2,203,147 - 9291 mRNA_923 0.46 -0.5
2,203,189 - 9291 mRNA_923 0.48 1.1
2,203,196 + 9291 mRNA_923 0.48 -0.0
2,203,196 + 9291 mRNA_923 0.48 -1.0
2,203,242 + 9291 mRNA_923 0.50 0.1
2,203,274 + 9291 mRNA_923 0.52 1.0
2,203,282 - 9291 mRNA_923 0.52 0.5
2,203,282 + 9291 mRNA_923 0.52 0.0
2,203,389 - 9291 mRNA_923 0.56 1.5
2,203,405 - 9291 mRNA_923 0.57 1.4
2,203,426 + 9291 mRNA_923 0.58 -2.1
2,203,492 + 9291 mRNA_923 0.61 1.0
2,203,544 - 9291 mRNA_923 0.63 0.7
2,203,583 - 9291 mRNA_923 0.64 1.2
2,203,596 - 9291 mRNA_923 0.65 0.1
2,203,622 + 9291 mRNA_923 0.66 0.7
2,203,668 - 9291 mRNA_923 0.68 -1.4
2,203,668 - 9291 mRNA_923 0.68 -0.1
2,203,689 - 9291 mRNA_923 0.69 2.4
2,203,691 - 9291 mRNA_923 0.69 0.6
2,203,778 + 9291 mRNA_923 0.72 2.3
2,203,780 + 9291 mRNA_923 0.72 1.6
2,203,782 - 9291 mRNA_923 0.72 1.1
2,203,784 + 9291 mRNA_923 0.73 0.7
2,203,792 + 9291 mRNA_923 0.73 0.5
2,203,841 - 9291 mRNA_923 0.75 0.9
2,203,928 + 9291 mRNA_923 0.78 2.0
2,204,089 - 9291 mRNA_923 0.85 -0.4
2,204,099 + 9291 mRNA_923 0.86 0.4
2,204,102 - 9291 mRNA_923 0.86 0.3
2,204,176 + 9291 mRNA_923 0.89 1.0
2,204,178 - 9291 mRNA_923 0.89 1.1
2,204,290 + 1.0
2,204,323 - 0.5
2,204,371 - 1.7
2,204,371 - -0.5
2,204,371 + -1.2
2,204,398 + -1.0
2,204,409 - 1.3
2,204,424 - 0.4
2,204,495 - -0.7
2,204,542 - -3.5
2,204,604 + -1.1
2,204,640 - -0.2
2,204,644 + 1.2
2,204,649 - -0.6
2,204,674 - 0.2
2,204,679 - -0.4
2,204,682 - -0.9
2,204,685 + 0.9
2,204,686 - 0.1
2,204,737 + -0.0
2,204,737 + -3.1
2,204,886 - 0.9
2,204,990 + 9292 mRNA_924 0.15 2.3
2,205,017 + 9292 mRNA_924 0.17 1.1
2,205,022 - 9292 mRNA_924 0.17 0.2
2,205,115 - 9292 mRNA_924 0.23 2.4
2,205,210 + 9292 mRNA_924 0.30 -0.1