Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_823

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1965379 to 1971450 9190 mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1971584 to 1974293 9191 mRNA_824: 9192 - Hypothetical Protein, at 1974667 to 1975574 9192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,970,946 - 1.7
1,971,236 - 2.5
1,971,385 + -0.1
1,971,535 - -0.3
1,971,795 - 0.2
1,971,829 + 0.8
1,971,829 + -2.0
1,971,834 + -0.9
1,972,246 + 9191 mRNA_823 0.24 -0.1
1,972,428 + 9191 mRNA_823 0.31 -0.5
1,972,567 + 9191 mRNA_823 0.36 0.6
1,972,862 - 9191 mRNA_823 0.47 -0.1
1,972,866 + 9191 mRNA_823 0.47 2.7
1,972,870 + 9191 mRNA_823 0.47 -0.2
1,972,991 - 9191 mRNA_823 0.52 -2.4
1,973,143 + 9191 mRNA_823 0.58 -0.1
1,973,302 - 9191 mRNA_823 0.63 0.3
1,973,374 - 9191 mRNA_823 0.66 0.7
1,973,444 + 9191 mRNA_823 0.69 -1.2
1,973,719 - 9191 mRNA_823 0.79 0.9
1,974,203 - -0.7
1,974,294 - -0.4
1,974,457 + 0.5
1,975,027 - 9192 mRNA_824 0.40 -1.9
1,975,054 + 9192 mRNA_824 0.43 -0.1