Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_538

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1274632 to 1275903 8905 mRNA_538: 8906 - Hypothetical Protein, at 1276720 to 1277120 8906 mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1277629 to 1279340 8907

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,275,794 - 0.4
1,275,802 + 0.2
1,275,833 + -0.2
1,275,844 - 0.1
1,275,851 + 0.9
1,275,976 + 0.3
1,275,978 + 0.1
1,275,991 + 0.0
1,276,003 + -0.0
1,276,169 - 0.8
1,276,597 - -0.1
1,276,763 + 8906 mRNA_538 0.11 0.4
1,276,870 + 8906 mRNA_538 0.37 -0.2
1,277,347 - -1.4
1,277,350 - 0.0
1,277,351 - 1.4
1,277,352 + -0.6
1,277,400 - 2.0
1,277,421 - -1.0
1,277,437 - -0.3
1,277,437 - -0.1
1,277,438 - -0.8
1,277,442 - 0.2
1,277,444 + -0.4
1,277,457 - 0.4
1,277,461 + -0.3
1,277,463 + -0.8
1,277,467 + 0.4
1,277,467 + -0.8
1,277,468 - 0.1
1,277,470 + 0.3
1,277,472 - 0.8
1,277,474 - 0.7
1,277,480 - -0.2
1,277,509 - -1.6
1,277,515 - 0.1
1,277,517 - -0.4
1,277,535 + -0.3
1,277,543 - 0.9
1,277,640 + -0.6
1,277,655 - -2.1
1,277,675 + 0.1
1,277,675 - -1.9
1,277,676 + -0.9
1,277,680 - -4.4
1,277,682 + -1.9
1,277,692 + -1.2
1,277,800 - -3.5
1,277,812 - 8907 mRNA_539 0.11 1.8
1,277,822 - 8907 mRNA_539 0.11 0.1
1,277,825 - 8907 mRNA_539 0.11 -0.2
1,277,834 - 8907 mRNA_539 0.12 -2.4
1,277,968 - 8907 mRNA_539 0.20 0.9
1,278,003 + 8907 mRNA_539 0.22 -2.3