Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_300

Experiments: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707483 to 708587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709223 to 712870 8668

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
708,303 + 8667 mRNA_299 0.74 0.5
708,490 - 1.2
708,731 - -0.8
708,734 - -0.7
708,734 + -0.3
709,004 + -0.7
709,028 + 0.0
709,138 - -0.1
709,159 - 2.2
709,180 + -0.2
709,188 - -0.1
709,215 + 0.1
709,243 - 0.6
709,317 - 0.2
709,342 + -1.7
709,443 - 1.4
709,474 - 0.3
709,502 + -0.2
709,626 - 8668 mRNA_300 0.11 3.0
709,631 - 8668 mRNA_300 0.11 -0.8
709,916 - 8668 mRNA_300 0.19 0.0
709,945 + 8668 mRNA_300 0.20 -0.2
710,214 - 8668 mRNA_300 0.27 0.1
710,501 + 8668 mRNA_300 0.35 1.2
710,932 - 8668 mRNA_300 0.47 -0.7
710,970 - 8668 mRNA_300 0.48 -1.5
711,209 + 8668 mRNA_300 0.54 2.0
711,592 - 8668 mRNA_300 0.65 -0.4
711,658 - 8668 mRNA_300 0.67 -1.1
712,422 + 8668 mRNA_300 0.88 0.4
712,561 - -0.7
713,004 - -1.1
713,107 - -0.2
713,250 - 0.8
713,278 + 0.8
713,283 + 0.7
713,404 + 0.4
713,417 - 0.0
713,418 - -0.2
713,422 + 2.1
713,423 - 1.6
713,443 + 1.1
713,443 + -0.1
713,447 + -0.2
713,477 - -0.2
713,483 - -1.9
713,490 + 0.5
713,529 + 1.5
713,533 + -2.0
713,537 - -0.2
713,544 - 1.2
713,545 - 0.5
713,547 + -1.6
713,550 + -0.3
713,556 - -0.4
713,563 + 1.5
713,566 - 2.1
713,576 - -0.5
713,581 + 1.2
713,698 - 0.4
713,715 + -0.2
713,716 + 0.2
713,720 - -0.4
713,868 + 0.9