Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_299

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705560 to 707244 8666 mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707483 to 708587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709223 to 712870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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706,485 + 8666 mRNA_298 0.55 0.5
706,614 - 8666 mRNA_298 0.63 1.2
706,917 - 8666 mRNA_298 0.81 0.3
707,073 - 8666 mRNA_298 0.90 1.0
707,093 + -1.6
707,187 + -2.9
707,204 - 0.3
707,334 - 0.9
707,336 - -0.1
707,350 - -0.2
707,364 - -0.1
707,389 + 1.1
707,417 - -1.1
707,426 + 0.3
707,427 - -0.0
707,427 - 2.4
707,538 - 0.5
707,581 + -1.3
707,690 - 8667 mRNA_299 0.19 0.1
707,691 - 8667 mRNA_299 0.19 -0.1
707,695 + 8667 mRNA_299 0.19 -0.8
707,696 + 8667 mRNA_299 0.19 0.6
707,833 - 8667 mRNA_299 0.32 1.2
707,838 + 8667 mRNA_299 0.32 -1.1
707,866 + 8667 mRNA_299 0.35 0.9
708,024 + 8667 mRNA_299 0.49 -1.8
708,025 + 8667 mRNA_299 0.49 0.1
708,158 - 8667 mRNA_299 0.61 0.3
708,303 + 8667 mRNA_299 0.74 0.5
708,490 - 1.2
708,731 - -0.8
708,734 - -0.7
708,734 + -0.3
709,004 + -0.7
709,028 + 0.0
709,138 - -0.1
709,159 - 2.2
709,180 + -0.2
709,188 - -0.1
709,215 + 0.1
709,243 - 0.6
709,317 - 0.2
709,342 + -1.7
709,443 - 1.4
709,474 - 0.3
709,502 + -0.2